GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR000135|High mobility group box HMG1 and HMG2,
IPR009071|High mobility group box
         (297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    75   2e-14
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    48   2e-06
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    39   0.001
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    39   0.001
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac...    38   0.002
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    29   1.1  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    29   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   4.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   5.7  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    26   5.7  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   9.9  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   9.9  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 32/81 (39%), Positives = 45/81 (55%)

Query: 185 RGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETK 244
           R  K  + KDPN PKR++SAF  F  + R K+K  NP+ T G +   LG+RW       +
Sbjct: 3   RAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTER 62

Query: 245 AKYDALSEKDKARYDREMTAY 265
             Y+  + +DK RY+RE   Y
Sbjct: 63  EPYEEKARQDKERYERERKEY 83



 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 96  ARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEK 155
           A+  R +  N P+  M+A+ FF    RE+ K   PD +  F        +RW  ++  E+
Sbjct: 5   AKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDAT--FGQLGSLLGKRWKELTSTER 62

Query: 156 QRFHEMAEQDKHRFDLEMQNY 176
           + + E A QDK R++ E + Y
Sbjct: 63  EPYEEKARQDKERYERERKEY 83


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 189 RQQMKDPNAPKRSLSAFFLFCNDERSKVK--AGNPEYTMGDIAKELGRRWAAADPETKAK 246
           +++ +DP  PKR  SA+ LF  ++RS++K   G     + ++ K +  +W +   + +  
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKT 167

Query: 247 YDALSEKDKARYDREMTAY 265
           Y+  + K +  Y+ EM AY
Sbjct: 168 YEEEASKLREAYEEEMAAY 186



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 20/82 (24%), Positives = 41/82 (50%)

Query: 100 RSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
           ++R   +P+   +AY  F +  R E K+   + S      +K   E+W ++SE +++ + 
Sbjct: 110 KARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYE 169

Query: 160 EMAEQDKHRFDLEMQNYVPPKD 181
           E A + +  ++ EM  Y   K+
Sbjct: 170 EEASKLREAYEEEMAAYNASKE 191


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/70 (25%), Positives = 33/70 (47%)

Query: 200 RSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYD 259
           R  +AF L+  ++ + +   NP      ++K +G  W     E + +Y  +SE  KA++ 
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQ 164

Query: 260 REMTAYKKGP 269
           +    YK  P
Sbjct: 165 KMYPGYKYQP 174


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 18/70 (25%), Positives = 33/70 (47%)

Query: 200 RSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYD 259
           R  +AF L+  ++ + +   NP      ++K +G  W     E + +Y  +SE  KA++ 
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQ 164

Query: 260 REMTAYKKGP 269
           +    YK  P
Sbjct: 165 KMYPGYKYQP 174


>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 152 EKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCND 211
           + EK+RF E         +++ +N    K+    G +  +++ P+ PK+  SAF LF  +
Sbjct: 102 DAEKKRFMETLRSFTPT-EIDSENRRRSKEAHSTGSRYYRLRHPDVPKKPSSAFILFYKE 160

Query: 212 ERSKVK----AGNPE--YTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREM 262
            R+  K     G PE   T+ +  +   + W     + K  +   S+  K +YD+ M
Sbjct: 161 LRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKKPFIDKSKALKEQYDKFM 217


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 138 AFSKKCAERWNTMSEKEKQRFHE--MAEQDKHR 168
           A  K   + WN ++E+EK+ +HE  +A ++K R
Sbjct: 224 ALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAR 256


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 102 RPYNKPRGRMTAYAFFVQTC---REEHKKKYPDVSVIFAAFSKKCAE 145
           R Y    G ++ Y F    C   R+++KK  PD  ++F+  S  C +
Sbjct: 227 RAYVLATGALSVYLFNEMLCLLARDKYKKPTPDPDLLFSHLSNTCLQ 273


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 159  HEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAF 205
            +EM + DK   DLE  +Y   KD  +      + +  N PKR+++ +
Sbjct: 1317 NEMEDLDKME-DLEKPDYAEEKDPYITVMSELRSRIQNVPKRTVTVY 1362


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 139 FSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDP 195
           F KK A  +   SE+++Q F E  E D+      ++N +   +M+  GRK    + P
Sbjct: 227 FEKKPAIGFYDTSEEDRQNFREKREADQK----IIENGIRNNEMESEGRKFGHFEKP 279


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 117 FVQTCREEHKKKYPDVSVIFAAFSKKCAERW 147
           FV TC+  H+K+Y    + + AFS     RW
Sbjct: 169 FVLTCKNLHRKRYSS-DMEYIAFSCSKDRRW 198


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 124 EHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMK 183
           E+K +    + +      K  E  +  SE++K       + +  + + +  N +P K+ +
Sbjct: 36  ENKNEDQKATNLSDRLGPKITENVDAKSEQDKATNTIAEDANTKQSENDESNLIPNKN-E 94

Query: 184 VRGRKRQQMKDPNAPKRSLSAF 205
           VR +      DPN+P  S+ +F
Sbjct: 95  VRVKLADLQADPNSPLFSVKSF 116


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 138 AFSKKCAERWNTMSEKEKQRFHEMA--EQDKHRFDLEMQNYVPPKDMKVRGRKRQ 190
           + S+   + W   S + K+ + +++  E+ KH  +     Y P K   VR R ++
Sbjct: 41  SISRIIGQLWRNESAQVKKYYSDLSALERQKHMLENPEYKYTPKKRSTVRRRHKK 95


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 211 DERSKVKAGNPEY--TMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKK 267
           D+  +   G+PE   T  +I  +LG+ W A D   K  +       +A Y   +  Y++
Sbjct: 864 DQDKQRVTGDPEARATKNEIRAKLGKTWRALDSLGKQPWVDEINARRANYSTRLEEYQR 922


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,223
Number of Sequences: 5004
Number of extensions: 33947
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 17
length of query: 297
length of database: 2,362,478
effective HSP length: 72
effective length of query: 225
effective length of database: 2,002,190
effective search space: 450492750
effective search space used: 450492750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)