Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR000135|High mobility group box HMG1 and HMG2,
IPR009071|High mobility group box
(297 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 2e-35
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 66 4e-11
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 64 1e-10
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 63 3e-10
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 9e-10
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 60 3e-09
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 51 1e-06
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 50 3e-06
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 9e-05
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 44 1e-04
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 44 2e-04
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 41 0.001
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 38 0.007
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 37 0.017
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 37 0.023
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 37 0.023
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 35 0.092
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 33 0.28
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.37
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.65
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 30 2.0
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_32415| Best HMM Match : Gag_MA (HMM E-Value=3.2) 29 3.5
SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 146 bits (354), Expect = 2e-35
Identities = 75/167 (44%), Positives = 105/167 (62%), Gaps = 3/167 (1%)
Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164
NKP+G +AY FF+Q RE+ +++ S+ A FSK AE+W MSE+EK+ F + A +
Sbjct: 10 NKPKGAKSAYNFFLQDQREKLQREEGKFSL--ADFSKVSAEKWKNMSEEEKETFVQKAGK 67
Query: 165 DKHRFDLEMQNYVPPKDMKVRGRKRQ-QMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEY 223
DK RF EMQ+Y PP + +KR+ Q KDPN PKR LSA+F F N +R VK NP
Sbjct: 68 DKERFKEEMQSYTPPPSEESGKKKRKKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNA 127
Query: 224 TMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKKGPL 270
+ G ++K LG W+ + K +Y +++KDK RY+ EM A+K G L
Sbjct: 128 SGGALSKVLGEMWSKMTDDDKTQYQDMAKKDKVRYESEMKAFKDGKL 174
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154
K R +++ NKP+ ++AY F+ R++ KK P+ S A SK E W+ M++ +
Sbjct: 90 KKRKKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNAS--GGALSKVLGEMWSKMTDDD 147
Query: 155 KQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQ 190
K ++ +MA++DK R++ EM+ + KD K+ ++ +
Sbjct: 148 KTQYQDMAKKDKVRYESEMKAF---KDGKLPAKQNK 180
Score = 55.6 bits (128), Expect = 5e-08
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSE 252
KDPN PK + SA+ F D+R K++ ++++ D +K +W E K + +
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAG 66
Query: 253 KDKARYDREMTAYKKGP 269
KDK R+ EM +Y P
Sbjct: 67 KDKERFKEEMQSYTPPP 83
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 246
R+R+ ++D NAPK L+ + F N++R KV++ +PE ++ K LG W+ + K +
Sbjct: 133 RRRKTLRDTNAPKAPLTGYVQFLNEQREKVRSEHPELPFPEVTKILGAEWSKMSQDDKQR 192
Query: 247 YDALSEKDKARYDREMTAYKK 267
Y +E+DK RY E+ Y+K
Sbjct: 193 YLDDAERDKERYIIELENYQK 213
Score = 58.4 bits (135), Expect = 7e-09
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154
K R R N P+ +T Y F+ RE+ + ++P++ F +K W+ MS+ +
Sbjct: 132 KRRRKTLRDTNAPKAPLTGYVQFLNEQREKVRSEHPELP--FPEVTKILGAEWSKMSQDD 189
Query: 155 KQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPN 196
KQR+ + AE+DK R+ +E++NY K +K+ + K N
Sbjct: 190 KQRYLDDAERDKERYIIELENYQKTDAYKSFVKKQIERKRKN 231
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 65.7 bits (153), Expect = 4e-11
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 183 KVRGRKRQQM-KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADP 241
K +GRKR++ KD NAPK L+ + F N+ R KV++ NP+ ++ + LG W+
Sbjct: 161 KFKGRKRKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPT 220
Query: 242 ETKAKYDALSEKDKARYDREMTAYKK 267
K + +EKDK RY +E+ Y++
Sbjct: 221 PQKQLFLEEAEKDKERYMKELEEYQR 246
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 95 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 154
+ R + N P+ +T Y F+ RE+ + + PD+ F ++ W+ + +
Sbjct: 165 RKRKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLP--FHEVTRILGNMWSQLPTPQ 222
Query: 155 KQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMK 193
KQ F E AE+DK R+ E++ Y K+ K++ +K
Sbjct: 223 KQLFLEEAEKDKERYMKELEEYQRTDTYKMFIAKQKALK 261
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 188 KRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYT--MG--DIAKELGRRWAAADPET 243
K+ + KDPNAPK+ +AFF+FC +R+ ++ + + T MG ++ K L + W P+
Sbjct: 45 KQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNLLPDE 104
Query: 244 KAKYDALSEKDKARYDREMTAY 265
K Y + E+DK RY+ EM Y
Sbjct: 105 KKVYYEMYERDKERYELEMKQY 126
Score = 55.6 bits (128), Expect = 5e-08
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 94 NKARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFA--AFSKKCAERWNTMS 151
+ A+ + + N P+ A+ F Q R ++ + D + + +K A+ WN +
Sbjct: 42 SSAKQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNLL 101
Query: 152 EKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKR 200
EK+ ++EM E+DK R++LEM+ Y K K+Q KDP++ KR
Sbjct: 102 PDEKKVYYEMYERDKERYELEMKQYSSDKPPS----KKQ--KDPSSKKR 144
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 62.9 bits (146), Expect = 3e-10
Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 16/158 (10%)
Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164
N+P+ +T+Y + Q R + KKYP++ + K +++W MSE+ K+ + E E+
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKS--TELAAKLSKKWRKMSEERKKAYTEQYEE 207
Query: 165 DKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYT 224
+K ++ ++ +++ + K PN + LSAF L+ N R + NP+ +
Sbjct: 208 EKKEYETQLLDFL-------------KNKYPNV-EPPLSAFELWANQARKDLLVSNPDIS 253
Query: 225 MGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREM 262
+ K+L R+W D + K + + + +Y +++
Sbjct: 254 AKKLKKKLKRKWKEIDEKGKKTWIKKEKTEMRKYQKKI 291
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 151 SEKEKQRFHEMAEQ-DKHRFDLEM-QNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLF 208
+E+ + +FH + + K R E+ ++ P + + DPN PK L+++F +
Sbjct: 103 NEEIQTKFHRLCQSVRKMRTAREVIEDIKVPSHANRSPKTPKPFVDPNQPKMPLTSYFRY 162
Query: 209 CNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKK 267
C R+K+ P ++A +L ++W E K Y E++K Y+ ++ + K
Sbjct: 163 CQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEERKKAYTEQYEEEKKEYETQLLDFLK 221
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 61.3 bits (142), Expect = 9e-10
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 172 EMQNYVPPKDMK---VRGRKRQQMKDPNAPKRSLSAFF---LFCNDERSKVKAGNPEYTM 225
++Q PK K +G+KR++ D N PK ++ + F N R VK +P T
Sbjct: 165 QIQTIAEPKKRKGGWPKGKKRKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTF 224
Query: 226 GDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKK 267
+I K LG+ W + PE K K+ +E+DK RY E+ AY++
Sbjct: 225 PEITKMLGQEWNSLLPEEKQKFLDEAEEDKKRYVEELRAYQQ 266
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 105 NKPRGRMTAYAFFVQ---TCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEM 161
NKP+ +T Y +V+ + RE K ++P ++ F +K + WN++ +EKQ+F +
Sbjct: 192 NKPKAPVTGYVHYVRFLNSRRESVKHQHPHLT--FPEITKMLGQEWNSLLPEEKQKFLDE 249
Query: 162 AEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAP 198
AE+DK R+ E++ Y + + KRQ +K P
Sbjct: 250 AEEDKKRYVEELRAYQQSEQYQA-FVKRQHVKRTKHP 285
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 59.7 bits (138), Expect = 3e-09
Identities = 38/149 (25%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 119 QTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVP 178
Q REE + + P S + S+ +++ ++K++ + + K + + ++V
Sbjct: 468 QDVREEFESE-PSSSEASGSDSEGESKKKKKEKPEKKRKAEKPPKSPKKK--AKTASFVE 524
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
+ +G K++ KDPNAPKR++SA+ L+ ND R ++K NP ++ +++K G W
Sbjct: 525 TGEKGKKGGKKK--KDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMW-- 580
Query: 239 ADPETKAKYDALSEKDKARYDREMTAYKK 267
+ K+K++ + +K +Y + M Y +
Sbjct: 581 KNLTDKSKWEEKAAIEKQKYVQRMKEYNE 609
Score = 44.8 bits (101), Expect = 9e-05
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164
N P+ M+AY ++ R+E K K P +SV SK E W +++K K + E A
Sbjct: 540 NAPKRAMSAYMLWLNDTRQEIKDKNPGISV--TEVSKVAGEMWKNLTDKSK--WEEKAAI 595
Query: 165 DKHRFDLEMQNY----VPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGN 220
+K ++ M+ Y K+ +K K APK S+ D K K+
Sbjct: 596 EKQKYVQRMKEYNENKKNDKEESSPKKKSPSKKASKAPKEEKSSSPRKSLDNNQKFKSAE 655
Query: 221 PEYTMGD 227
+ GD
Sbjct: 656 FVESSGD 662
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 51.2 bits (117), Expect = 1e-06
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 140 SKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPK 199
+K E W +++++K+ + AE DK R+ +K G K KDP+ PK
Sbjct: 532 AKLAGEEWKKLNDEQKKPYVAKAEADKQRY------------LKESG-KNDPKKDPDKPK 578
Query: 200 RSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYD 259
R +A+FLF R K AG I G RW E K Y +++ +Y+
Sbjct: 579 RPPTAYFLFLAAFR-KEMAGKALEDGKKIPSLAGERWREMSDEDKKPYTIQEAEERNKYE 637
Query: 260 REMTAYKK 267
+ M ++K
Sbjct: 638 KVMEEWRK 645
Score = 48.0 bits (109), Expect = 9e-06
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKA-----GNPEYTMGDIAKELGRRWAAADP 241
RK++ D KR+ SA+ F +D R+K+KA G P ++AK G W +
Sbjct: 485 RKKKAKGDGPVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLND 544
Query: 242 ETKAKYDALSEKDKARYDRE 261
E K Y A +E DK RY +E
Sbjct: 545 EQKKPYVAKAEADKQRYLKE 564
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 180 KDMKVRGRKRQQM-KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
K + +G KR++ K P + LSA+ +F + ++ ++ NP G+IAK +G+ W
Sbjct: 906 KKKRKKGEKRKRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWEN 965
Query: 239 ADPETKAKYDALSEKDKARYDREM 262
E K Y E KA Y + M
Sbjct: 966 LPEEQKKVYHCKHETAKAEYQKAM 989
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
P D ++ +K KR ++AF ++ +ER K+ NP+ +I+K LG W
Sbjct: 308 PDDQEINASLMSLVKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQ 367
Query: 239 ADPETKAKYDALSEKDKARYDREMTAYKKGP 269
+ K + ++K +A++ +E YK P
Sbjct: 368 LADDDKKPFVEEAKKLRAQHMKEHPDYKYRP 398
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 44.8 bits (101), Expect = 9e-05
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
KR S + LF ++ R ++ +PEY G+I++ +G W A KA+Y+ ++ ++
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQMQLSQL 1328
Query: 259 DREM 262
+ E+
Sbjct: 1329 ETEV 1332
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
KR S + LF ++ R ++ +PEY G+I++ +G W A KA+Y+ ++ ++
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQMQLSQL 95
Query: 259 DRE 261
+ E
Sbjct: 96 ETE 98
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 44.0 bits (99), Expect = 2e-04
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
KR ++AF ++ +ER K+ NP+ +I+K LG W + K + ++K +A++
Sbjct: 11 KRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKKLRAQH 70
Query: 259 DREMTAYKKGP 269
+E YK P
Sbjct: 71 MKEHPDYKYRP 81
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGN-PEYTMGDIAKELGRRWAAADPETKAKYDALS 251
KD N KR ++AF ++ + ER ++K+ P +I+K LG W A E K Y +
Sbjct: 4 KDANHVKRPMNAFMVW-SKERRRIKSQECPRMHNSEISKILGCEWKAMKDELKQPYIEKA 62
Query: 252 EKDKARYDREMTAYKKGP 269
++ +A++ RE YK P
Sbjct: 63 KELQAQHSRENPGYKYKP 80
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 43.2 bits (97), Expect = 3e-04
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 195 PNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKD 254
P KR AFF F D KVK NP +I K L +WA +P K Y ++D
Sbjct: 303 PKKHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLEPSVKECYRKEYQQD 362
Query: 255 KARYDREMTAYKKGP 269
+ YKK P
Sbjct: 363 MEEF---RAPYKKLP 374
Score = 39.9 bits (89), Expect = 0.002
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 153 KEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSA-----FFL 207
KE+ + AE KH D + N P R +Q M++ AP + L F L
Sbjct: 325 KEENPHLKDAEIRKHLSD-QWANLEPSVKECYRKEYQQDMEEFRAPYKKLPRKPPRHFSL 383
Query: 208 FCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266
F + +K+KA N + DI +ELG +W + + SE + Y+ E+ ++
Sbjct: 384 FMRENFAKIKAENQGMSNPDIMRELGAKWRNLPFSEREEIRRKSEDAQKTYEAEIVEFE 442
Score = 34.3 bits (75), Expect = 0.12
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 20/180 (11%)
Query: 103 PYNK-PRGRMTAYAFFVQTCREEHKK-KYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHE 160
PY K PR ++ F+ RE K K + + ++ +W + E++
Sbjct: 369 PYKKLPRKPPRHFSLFM---RENFAKIKAENQGMSNPDIMRELGAKWRNLPFSEREEIRR 425
Query: 161 MAEQDKHRFDLEMQNY-------------VPPKDMKVRGRKRQQMKDPNAPKRSLSAFFL 207
+E + ++ E+ + V KD K++ K+++MK N PK+ +AF
Sbjct: 426 KSEDAQKTYEAEIVEFEDQLSEGEKEFLNVQAKD-KMKELKQRKMKLLNFPKKPGTAFIY 484
Query: 208 FCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKK 267
F ER E + + + W + K Y + + +Y+ E+T +K+
Sbjct: 485 FLTMERESFPRREGE-GITQWTQRMAETWRDMSDDEKEMYRMANRRAVEKYNEEVTEWKE 543
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 190 QQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDA 249
++ D KR ++AF ++ ER K+ +P+ +I+K LG+RW K +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSESEKRPFVE 96
Query: 250 LSEKDKARYDREMTAYKKGP 269
SE+ + R+ + YK P
Sbjct: 97 ESERLRIRHMQAYPDYKYRP 116
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 111 MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFD 170
M A+ + Q R + +++PD+ A SK+ +RW +SE EK+ F E +E+ + R
Sbjct: 49 MNAFMVWSQIERRKMAEEHPDMHN--AEISKRLGKRWKLLSESEKRPFVEESERLRIR-- 104
Query: 171 LEMQNYVPPKDMKVRGRKRQQ 191
MQ Y D K R RK++Q
Sbjct: 105 -HMQAY---PDYKYRPRKKKQ 121
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
KR L+AF L+ R + NP+ DI+++LG W E KA Y ++K K +
Sbjct: 20 KRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEEEKAYYFEEAKKLKEEH 79
Query: 259 DREMTAYKKGP 269
YK P
Sbjct: 80 KERYPHYKYQP 90
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 186 GRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKA 245
G + + + KR ++AF ++ + R K+ NP+ +I+K LG W + K
Sbjct: 777 GNESTKANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEKR 836
Query: 246 KYDALSEKDKARYDREMTAYKKGP 269
Y + + +A + +E YK P
Sbjct: 837 PYIDEARRLRAVHMKEHPDYKYRP 860
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 186 GRKRQQMKDPNAP-KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETK 244
GR R + D KR ++AF ++ ER ++ NPE +++K LG W A + K
Sbjct: 353 GRARTEKDDETERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRALNSTQK 412
Query: 245 AKYDALSEKDKARYDREMTAYKKGP 269
+ +E+ + ++ ++ YK P
Sbjct: 413 RPFVDEAERLRLQHMQDYPNYKYRP 437
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDK 255
+R ++AF +F R+ V +P ++K LG W A PE K Y+AL+ + K
Sbjct: 517 RRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYALGPEEKQSYNALAAQVK 573
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
P ++V G K Q+ P+ KR ++AF ++ R K+ P +++K LG+ W
Sbjct: 49 PLPVRVNGIKTQK---PHV-KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKL 104
Query: 239 ADPETKAKYDALSEKDKARYDREMTAYKKGP 269
+ K + +E+ + ++ RE YK P
Sbjct: 105 LNDSEKKPFIEEAERLRIKHKREHPDYKYQP 135
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 37.1 bits (82), Expect = 0.017
Identities = 19/87 (21%), Positives = 42/87 (48%)
Query: 183 KVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPE 242
++ + + +D + KR +++F ++ R K NP+ +I+K LG+ W +
Sbjct: 79 RLERHRYEDEEDDSHVKRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTK 138
Query: 243 TKAKYDALSEKDKARYDREMTAYKKGP 269
K + +E+ + R+ +E Y+ P
Sbjct: 139 DKRPFVEKAERLRIRHMKEHPNYRYTP 165
Score = 31.5 bits (68), Expect = 0.86
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 111 MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFD 170
M ++ + + R + ++ P + A SK + WN ++ K+K+ F E AE+ + R
Sbjct: 98 MNSFMIWAKVMRRKFAEENPKLHN--AEISKLLGKAWNELTTKDKRPFVEKAERLRIRHM 155
Query: 171 LEMQNY-VPPKDMKVRGRKRQQ 191
E NY PK + R+ Q
Sbjct: 156 KEHPNYRYTPKRRGRQDRRNGQ 177
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 36.7 bits (81), Expect = 0.023
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
KR ++AF ++ + +R ++ A NP+ I+K LG W E K K+ A ++ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAKLLNELH 67
Query: 259 DREMTAYKKGP 269
E YK P
Sbjct: 68 MIEHPDYKYRP 78
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 36.7 bits (81), Expect = 0.023
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
KR ++AF ++ + +R ++ A NP+ I+K LG W E K K+ A ++ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKLTVEEKQKFFAEAKLLNELH 67
Query: 259 DREMTAYKKGP 269
E YK P
Sbjct: 68 MIEHPDYKYRP 78
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 34.7 bits (76), Expect = 0.092
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETK 244
K P P++ L + + +VK NP++ + DI K +G+ W D K
Sbjct: 23 KPPKPPEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDDAEK 74
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
KR ++AF ++ ER K+ P +I+K LG W+ E K + +++ + +
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEKRPFVTEAKRLRTIH 69
Query: 259 DREMTAYKKGP 269
+++ Y P
Sbjct: 70 NQKYPDYSYKP 80
Score = 31.5 bits (68), Expect = 0.86
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 111 MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFD 170
M A+ + +T R + KYP++ + SK W+ +SE+EK+ F + K
Sbjct: 13 MNAFMVWSRTERRKLALKYPNM--LNCEISKLLGAEWSRLSEEEKRPF---VTEAKRLRT 67
Query: 171 LEMQNYVPPKDMKVRGRKRQQMK 193
+ Q Y P K R RK + +K
Sbjct: 68 IHNQKY-PDYSYKPRRRKSKTVK 89
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 32.7 bits (71), Expect = 0.37
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 106 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQD 165
K + M A+ + + R K+YP + A S + E WN +S ++++ + + A +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANN--AEISIRLGEIWNDLSSEQQKPYFDEATRL 157
Query: 166 KHRFDLEMQNYV-PPKDMKVRGRKRQQMKDPNA 197
K + E N+V P+ K R+ Q+ P A
Sbjct: 158 KDKHKAEHPNWVYQPRPAK---RRALQLGTPGA 187
>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 158 FHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKR 200
++EM E+DK R++LEM+ Y K K+Q KDP++ KR
Sbjct: 37 YYEMYERDKERYELEMKQYSSDKPPS----KKQ--KDPSSKKR 73
>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 31.9 bits (69), Expect = 0.65
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 150 MSEKEKQRFHEM-AEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMK-DPNAPKRSLSAFFL 207
MS + + ++H E D H+ + + + D + K + K PN P S+S F+
Sbjct: 1 MSGRAQDKWHRHNKEDDIHKRGEVLCSVLEICDWSIEAAKHRNSKLPPNLPCSSIS--FV 58
Query: 208 FCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPE 242
F +R+ +P T+ +AKELG +A + E
Sbjct: 59 FAKWDRTLTGKYHPRSTVWKMAKELGLDASAYERE 93
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 117 FVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNY 176
+++T R+EHK +VI A K+ E + M E+E++ + ++ +Q + E +
Sbjct: 504 YLRTARKEHKLMLERKTVIEAR--KEYLE--SVMQERERREYEKIKKQKVENQEAEQKRL 559
Query: 177 VPPKDMKVRGRKRQQMKD 194
+ + R+RQ+++D
Sbjct: 560 DEERRQREIQRRRQELQD 577
>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 29.9 bits (64), Expect = 2.6
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 152 EKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQM-KDPNAPKRSLSAFFLFCN 210
+KE+ EM ++DK D E + + ++M +++M K+ K + +
Sbjct: 55 DKEEMDQEEMDKEDKEEMDKEDKEEMDQEEMDKEEMDQEEMDKEDKEDKEEMDQEEM--- 111
Query: 211 DERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREM 262
D+ K + E D +E+G+ D E K + D E DK D+EM
Sbjct: 112 DKEDKEEMDKEEMDKED-KEEMGK--GEMDKEDKEEMD--QEMDKEEMDQEM 158
>SB_32415| Best HMM Match : Gag_MA (HMM E-Value=3.2)
Length = 299
Score = 29.5 bits (63), Expect = 3.5
Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Query: 127 KKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAE---QDKHRFDLEMQNYVPPKDMK 183
K++P + F ++ + + W TM E+E+Q+ + + +D RF ++ PKD
Sbjct: 105 KEFPPLGFDFDRYTPESNKDWATMVEEEEQQKDQPTQITLKDPSRFKRKLL-LTDPKDQP 163
Query: 184 VRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGR-RWAAADPE 242
+ P +S+ + ++ G G + ++ R + A DP
Sbjct: 164 TSNK-------PTVSNKSMETDLHKLEKRQKQIDIGKNTVAYGRFSAQIPREKRAKEDPS 216
Query: 243 TKAKYDALSEK 253
T K+ S +
Sbjct: 217 TPDKFQQCSTR 227
>SB_29054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 28.7 bits (61), Expect = 6.0
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 153 KEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDE 212
KE Q F ++++ D E++ +V K + + +K P + LSAF N
Sbjct: 232 KELQEFERKKQEEE---DEEIRQFVYAKKVVIYTKKNTNAYLPK--QFLLSAFQDHTNRM 286
Query: 213 RSKVKAGNPEYTMGD----IAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKK 267
R K+ A + + D IAK L R A + E +AK++A ++ + ++ ++ ++
Sbjct: 287 RQKL-ADQMQQKVDDEDERIAKALAEREAKREAEERAKFEADMKEKRGIHEHRISMMRE 344
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 152 EKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCND 211
E+EK+R + E+ K R + E Q + ++ K + R+R++ K ++ L L
Sbjct: 332 EREKERIQQEKEKQKERREKEKQKH---QEKKEKERQREKEKLEKEKQKELERKELQRQK 388
Query: 212 ERSKV 216
ER K+
Sbjct: 389 ERMKI 393
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 111 MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHR 168
++A FF Q +EE KK+ D +F KK + + +K+K++ H+ + +H+
Sbjct: 342 ISAVKFFEQKQKEEFKKEETDYLDVF----KKGGTTKDKIEKKDKKKHHKKHKDKEHK 395
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,485,937
Number of Sequences: 59808
Number of extensions: 253546
Number of successful extensions: 1001
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 65
length of query: 297
length of database: 16,821,457
effective HSP length: 82
effective length of query: 215
effective length of database: 11,917,201
effective search space: 2562198215
effective search space used: 2562198215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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