GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR000135|High mobility group box HMG1 and HMG2,
IPR009071|High mobility group box
         (297 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    25   1.9  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    25   2.6  
Y17699-1|CAA76819.1|   81|Anopheles gambiae hypothetical protein...    24   5.9  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   5.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   5.9  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 147 WNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMK 193
           W T+      + H   +Q + +   + + YVPP   ++R +++QQ +
Sbjct: 235 WTTVVRGRPSQRHRQPQQQQQQQQQQGERYVPP---QLRQQRQQQQR 278



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/41 (21%), Positives = 24/41 (58%)

Query: 153 KEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMK 193
           +++QR  +  +Q + +   + + YVPP+  + R +++ Q +
Sbjct: 274 QQQQRPRQQQQQQQQQQQQQGERYVPPQLRQQRQQQQHQQQ 314



 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 147 WNTMSEK-EKQRFHEMAEQDKHRFDLEM-QNYVPPKDMKVRGRKRQQMKDPNAPKR 200
           W T+      QR  ++ +Q + +   +  + YVPP+  + R +++ Q +    P++
Sbjct: 420 WTTVVRSCPSQRQRQLQQQQQQQQQQQQGERYVPPQLRQQRQQQQPQQQQQQRPQQ 475


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 92  TVNKARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMS 151
           T +   +PRS      RG +     F +  R  ++ K         A  K  +++     
Sbjct: 213 TSHAVMLPRSEASTAVRGDVVPELTFSEVVRRRYRGK---------ATGKPRSQQQPQQQ 263

Query: 152 EKEKQRFHEMAEQDKHRFDLEMQNYVPP--KDMKVRGRKRQQMK 193
           ++ +Q+  ++  + + +   + Q YVPP  +    + ++RQQ K
Sbjct: 264 QQPQQKQQQLQRRQQQQQQHQGQRYVPPQLRQQAHQQQQRQQQK 307


>Y17699-1|CAA76819.1|   81|Anopheles gambiae hypothetical protein
           protein.
          Length = 81

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 128 KYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKD 181
           K+  ++++    S  C E  +T +EKE Q   E ++ D+      ++    PKD
Sbjct: 2   KFLTIALLVCLLSVVCCEEASTAAEKE-QATTEASDSDEAAEQPNVEKDDSPKD 54


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 140 SKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEM 173
           S+K  E+W    E++++  H   +Q  H    E+
Sbjct: 632 SRKYVEKWLQQEEQQQEDDHHHHQQHHHHHHAEV 665


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 123 EEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQR 157
           +E K +  +  V+ AAF + CA+    +  +++ R
Sbjct: 325 DERKTELDEAKVMLAAFVQDCADSATALGSEDQVR 359


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,758
Number of Sequences: 2123
Number of extensions: 6914
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 297
length of database: 516,269
effective HSP length: 64
effective length of query: 233
effective length of database: 380,397
effective search space: 88632501
effective search space used: 88632501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)