Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR000135|High mobility group box HMG1 and HMG2,
IPR009071|High mobility group box
(297 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 160 1e-39
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 160 1e-39
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 160 1e-39
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 160 1e-39
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 73 3e-13
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 69 4e-12
AL110490-15|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 60 1e-09
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 60 1e-09
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 50 2e-06
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 48 1e-05
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 47 2e-05
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 46 2e-05
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 46 2e-05
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 46 2e-05
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 46 2e-05
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 46 2e-05
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 46 2e-05
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 40 0.002
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 36 0.026
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 36 0.026
Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z70780-13|CAD18872.2| 368|Caenorhabditis elegans Hypothetical p... 32 0.43
Z70780-12|CAA94820.2| 329|Caenorhabditis elegans Hypothetical p... 32 0.43
AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical ... 30 1.7
AF099003-3|ABA00149.1| 759|Caenorhabditis elegans Hypothetical ... 29 3.0
AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical ... 29 3.0
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 29 4.0
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 29 4.0
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z99281-28|CAE18029.1| 377|Caenorhabditis elegans Hypothetical p... 28 7.0
U70852-12|AAK29819.1| 204|Caenorhabditis elegans Hmg protein 5 ... 28 7.0
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 28 7.0
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 28 7.0
U64833-4|AAB04817.1| 380|Caenorhabditis elegans Hypothetical pr... 28 9.2
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 160 bits (389), Expect = 1e-39
Identities = 75/167 (44%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Query: 102 RPYNKP--RGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
R KP RG+ + Y FFV+ C EEHKKKYP+ +V SKKC+E+W TM + EK+RF+
Sbjct: 37 RDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFY 96
Query: 160 EMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAG 219
E+A++D R+ E+ + +R RKR + KDP+APKR+LSAFF + D+R +++AG
Sbjct: 97 ELAQKDAERYQAEVSVAAYGGEDAMRKRKRAK-KDPHAPKRALSAFFFYSQDKRPEIQAG 155
Query: 220 NPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266
+P++ +G +A+ELG+ W ETK Y+ ++ DK RY EM YK
Sbjct: 156 HPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYK 202
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
P + R K P K S FF+ E K K N + +I+K+ +W
Sbjct: 27 PSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKT 86
Query: 239 ADPETKAKYDALSEKDKARYDREMTAYKKG 268
+ K ++ L++KD RY E++ G
Sbjct: 87 MVDDEKRRFYELAQKDAERYQAEVSVAAYG 116
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 160 bits (389), Expect = 1e-39
Identities = 75/167 (44%), Positives = 109/167 (65%), Gaps = 5/167 (2%)
Query: 102 RPYNKP--RGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
R KP RG+ + Y FFV+ C EEHKKKYP+ +V SKKC+E+W TM + EK+RF+
Sbjct: 38 RDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFY 97
Query: 160 EMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAG 219
E+A++D R+ E+ Y M+ R R + KDP+APKR+LSAFF + D+R +++AG
Sbjct: 98 ELAQKDAERYQAEVAAYGGEDAMRKRKRAK---KDPHAPKRALSAFFFYSQDKRPEIQAG 154
Query: 220 NPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266
+P++ +G +A+ELG+ W ETK Y+ ++ DK RY EM YK
Sbjct: 155 HPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYK 201
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
P + R K P K S FF+ E K K N + +I+K+ +W
Sbjct: 28 PSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKT 87
Query: 239 ADPETKAKYDALSEKDKARYDREMTAY 265
+ K ++ L++KD RY E+ AY
Sbjct: 88 MVDDEKRRFYELAQKDAERYQAEVAAY 114
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 160 bits (389), Expect = 1e-39
Identities = 75/167 (44%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Query: 102 RPYNKP--RGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
R KP RG+ + Y FFV+ C EEHKKKYP+ +V SKKC+E+W TM + EK+RF+
Sbjct: 38 RDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFY 97
Query: 160 EMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAG 219
E+A++D R+ E+ + +R RKR + KDP+APKR+LSAFF + D+R +++AG
Sbjct: 98 ELAQKDAERYQAEVSVAAYGGEDAMRKRKRAK-KDPHAPKRALSAFFFYSQDKRPEIQAG 156
Query: 220 NPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266
+P++ +G +A+ELG+ W ETK Y+ ++ DK RY EM YK
Sbjct: 157 HPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYK 203
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
P + R K P K S FF+ E K K N + +I+K+ +W
Sbjct: 28 PSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKT 87
Query: 239 ADPETKAKYDALSEKDKARYDREMTAYKKG 268
+ K ++ L++KD RY E++ G
Sbjct: 88 MVDDEKRRFYELAQKDAERYQAEVSVAAYG 117
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 160 bits (389), Expect = 1e-39
Identities = 75/167 (44%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Query: 102 RPYNKP--RGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
R KP RG+ + Y FFV+ C EEHKKKYP+ +V SKKC+E+W TM + EK+RF+
Sbjct: 38 RDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFY 97
Query: 160 EMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAG 219
E+A++D R+ E+ + +R RKR + KDP+APKR+LSAFF + D+R +++AG
Sbjct: 98 ELAQKDAERYQAEVSVAAYGGEDAMRKRKRAK-KDPHAPKRALSAFFFYSQDKRPEIQAG 156
Query: 220 NPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266
+P++ +G +A+ELG+ W ETK Y+ ++ DK RY EM YK
Sbjct: 157 HPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYK 203
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAA 238
P + R K P K S FF+ E K K N + +I+K+ +W
Sbjct: 28 PSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKT 87
Query: 239 ADPETKAKYDALSEKDKARYDREMTAYKKG 268
+ K ++ L++KD RY E++ G
Sbjct: 88 MVDDEKRRFYELAQKDAERYQAEVSVAAYG 117
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 151 SEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCN 210
S+ +++ ++ K + + + P K+ V+ K ++ KDPN PKR+ +A+ ++ N
Sbjct: 516 SDPDEENIEPKKKESKEKKNKREKKEKPVKEKAVK--KGKKTKDPNEPKRATTAYIIWFN 573
Query: 211 DERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARYDREMTAYKK 267
R+ +K T+GD+AK+ G +W + + K +++ + +DKARY+ EM YKK
Sbjct: 574 ANRNSMKEDGD--TLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKK 628
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 100 RSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
+++ N+P+ TAY + R K+ + + +KK +W +MS +K+ ++
Sbjct: 554 KTKDPNEPKRATTAYIIWFNANRNSMKEDGDTLGDV----AKKAGAKWKSMSADDKKEWN 609
Query: 160 EMAEQDKHRFDLEMQNY 176
+ A QDK R++ EM+ Y
Sbjct: 610 DKAAQDKARYEAEMKEY 626
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 68.9 bits (161), Expect = 4e-12
Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 180 KDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAA 239
K K G+K ++ KDPNAPKR+ SA+ + R+++K ++ D+AK+ G +W
Sbjct: 538 KREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGD--SVADVAKKGGAKWKTM 595
Query: 240 DPETKAKYDALSEKDKARYDREMTAYKK-GP 269
+ K K++ +E+DK+RY++EM Y+K GP
Sbjct: 596 SSDDKKKWEEKAEEDKSRYEKEMKEYRKNGP 626
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 105 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQ 164
N P+ +AY + R E K+ V+ + +KK +W TMS +K+++ E AE+
Sbjct: 554 NAPKRATSAYMQWFLASRNELKEDGDSVADV----AKKGGAKWKTMSSDDKKKWEEKAEE 609
Query: 165 DKHRFDLEMQNY----VPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDE 212
DK R++ EM+ Y P K K + + +++S ++ +D+
Sbjct: 610 DKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSGPSSSKAISKEYISDSDD 661
>AL110490-15|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 185 RGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETK 244
R +K + KDPNAPKR++SAFF + + R ++K P + D+AK G W K
Sbjct: 15 RVKKGGKAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKL--TDK 70
Query: 245 AKYDALSEKDKARYDREMTAYKK 267
++++ + DK RY+ ++ YKK
Sbjct: 71 SRWEKKAADDKKRYEVDIANYKK 93
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 100 RSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
+++ N P+ M+A+ F++Q RE KK P + V A +K W +++K R+
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGV--ADVAKAAGVEWGKLTDKS--RWE 74
Query: 160 EMAEQDKHRFDLEMQNY 176
+ A DK R+++++ NY
Sbjct: 75 KKAADDKKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 185 RGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETK 244
R +K + KDPNAPKR++SAFF + + R ++K P + D+AK G W K
Sbjct: 15 RVKKGGKAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKL--TDK 70
Query: 245 AKYDALSEKDKARYDREMTAYKK 267
++++ + DK RY+ ++ YKK
Sbjct: 71 SRWEKKAADDKKRYEVDIANYKK 93
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 100 RSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFH 159
+++ N P+ M+A+ F++Q RE KK P + V A +K W +++K R+
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGV--ADVAKAAGVEWGKLTDKS--RWE 74
Query: 160 EMAEQDKHRFDLEMQNY 176
+ A DK R+++++ NY
Sbjct: 75 KKAADDKKRYEVDIANY 91
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 173 MQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKEL 232
M ++ P+ R + + P P+R L + + KV+A NPE + DI K +
Sbjct: 1 MSSFRHPQATPARNFQDMSSRGPKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMI 60
Query: 233 GRRWAAADPETKAKYDALSEKDKARYDREMTAYK 266
G+ W K+ Y E +KA Y+++M ++
Sbjct: 61 GKYWLDLPDGEKSHYQHEYELEKADYEKQMKHFQ 94
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSE 252
K N KR ++AF ++ ER K+ P+ +I+K+LG RW + E KA + A +E
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAE 147
Query: 253 KDKARYDREMTAYKKGP 269
+ + + +E YK P
Sbjct: 148 RLRVCHMQEYPDYKYKP 164
Score = 31.1 bits (67), Expect = 0.99
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 111 MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFD 170
M A+ + Q R + + PD+ A SK+ RW +++++EK F +AE ++ R
Sbjct: 97 MNAFMVWSQMERRKICEHQPDMHN--AEISKQLGSRWRSLTDEEKAPF--VAEAERLRV- 151
Query: 171 LEMQNYVPPKDMKVRGRKRQQMKDPN 196
MQ Y D K + RK+ + K+P+
Sbjct: 152 CHMQEY---PDYKYKPRKKPK-KNPD 173
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKV--KAGNPEYTMGDIAKELGRRW 236
P+++ R + + K + K+ L+AF F + R + + GN E ++ KELG+RW
Sbjct: 172 PQNVDRRAQGGGKAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRW 231
Query: 237 AAADPETKAKYDALSEKDK 255
E +AKY +++KDK
Sbjct: 232 HDLSKEEQAKYFEMAKKDK 250
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/91 (19%), Positives = 48/91 (52%)
Query: 111 MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFD 170
+ A+ +F++ R+ ++ + A +K+ +RW+ +S++E+ ++ EMA++DK
Sbjct: 195 LNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKETHK 254
Query: 171 LEMQNYVPPKDMKVRGRKRQQMKDPNAPKRS 201
+ ++ V +K ++ +D + P +
Sbjct: 255 ERYPEWSARENYAVNKKKTKKRRDKSIPSEN 285
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 189 RQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKY 247
R Q K PN KR ++AF ++ DER K+ P+ +I+K LG RW K Y
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPY 227
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 99 PRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 158
P+++ N + M A+ + + R + K YPD+ + SK RW MS EKQ +
Sbjct: 170 PQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPY 227
Query: 159 HE 160
+E
Sbjct: 228 YE 229
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 189 RQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKY 247
R Q K PN KR ++AF ++ DER K+ P+ +I+K LG RW K Y
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPY 224
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 99 PRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 158
P+++ N + M A+ + + R + K YPD+ + SK RW MS EKQ +
Sbjct: 167 PQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPY 224
Query: 159 HE 160
+E
Sbjct: 225 YE 226
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 189 RQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKY 247
R Q K PN KR ++AF ++ DER K+ P+ +I+K LG RW K Y
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPY 330
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 99 PRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 158
P+++ N + M A+ + + R + K YPD+ + SK RW MS EKQ +
Sbjct: 273 PQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPY 330
Query: 159 HE 160
+E
Sbjct: 331 YE 332
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 189 RQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKY 247
R Q K PN KR ++AF ++ DER K+ P+ +I+K LG RW K Y
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPY 378
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 99 PRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 158
P+++ N + M A+ + + R + K YPD+ + SK RW MS EKQ +
Sbjct: 321 PQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPY 378
Query: 159 HE 160
+E
Sbjct: 379 YE 380
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKV--KAGNPEYTMGDIAKELGRRW 236
P+++ R + + K + K+ L+AF F + R + + GN E ++ KELG+RW
Sbjct: 173 PQNVDRRAQGGGKAKKDDHVKKPLNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRW 232
Query: 237 AAADPETKAKYDALSEKDK 255
E +AKY +++KDK
Sbjct: 233 HDLSKEEQAKYFEMAKKDK 251
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/91 (19%), Positives = 48/91 (52%)
Query: 111 MTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFD 170
+ A+ +F++ R+ ++ + A +K+ +RW+ +S++E+ ++ EMA++DK
Sbjct: 196 LNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKETHK 255
Query: 171 LEMQNYVPPKDMKVRGRKRQQMKDPNAPKRS 201
+ ++ V +K ++ +D + P +
Sbjct: 256 ERYPEWSARENYAVNKKKTKKRRDKSIPSEN 286
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 189 RQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKY 247
R Q K PN KR ++AF ++ DER K+ P+ +I+K LG RW K Y
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPY 378
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 99 PRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 158
P+++ N + M A+ + + R + K YPD+ + SK RW MS EKQ +
Sbjct: 321 PQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPY 378
Query: 159 HE 160
+E
Sbjct: 379 YE 380
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 187 RKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 246
R+ Q+M RS SA+ LF + +S K P T G I++++ R+W + E K
Sbjct: 38 RQIQEMDQKKKKIRSTSAYALFFRERQSLEKRAAPYATFGQISQKIARQWDSLTEEEKKA 97
Query: 247 YDALSEKDK 255
Y EK++
Sbjct: 98 YKQRCEKNR 106
Score = 34.7 bits (76), Expect = 0.080
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 94 NKARMPRSRPYNKPRGRMT-AYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSE 152
+ +R + K + R T AYA F + + K+ P + F S+K A +W++++E
Sbjct: 35 SNSRQIQEMDQKKKKIRSTSAYALFFRERQSLEKRAAPYAT--FGQISQKIARQWDSLTE 92
Query: 153 KEKQRFHEMAEQDK 166
+EK+ + + E+++
Sbjct: 93 EEKKAYKQRCEKNR 106
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 193 KDPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSE 252
K+ + KR ++AF ++ +R K+ NP+ +I+K LG W + K + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAK 114
Query: 253 KDKARYDREMTAYKKGP 269
+ +A + +E YK P
Sbjct: 115 RLRAIHMKEHPDYKYRP 131
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 199 KRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKARY 258
KR ++AF ++ +R K+ NP+ +I+K LG W + K + +++ +A +
Sbjct: 49 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLRALH 108
Query: 259 DREMTAYKKGP 269
+E YK P
Sbjct: 109 MKEHPDYKYRP 119
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 115 AFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDK--HRFDLE 172
AF V + + K + + + SK+ W +SE+EK+ F + A++ + H +
Sbjct: 54 AFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLRALHMKEHP 113
Query: 173 MQNYVP---PKDMKVRGRKRQQMKDPNAPKRSL 202
Y P PK ++ + R + P P +SL
Sbjct: 114 DYKYRPRRKPKSSNLKQQPRLNIAMPTIPPQSL 146
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 195 PNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSE-- 252
P A K S S + LF + R ++ NP+ G+++K +G W E K Y+ +E
Sbjct: 1447 PKAVK-SKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVV 1505
Query: 253 -KDKARYD 259
+KA+ D
Sbjct: 1506 AVEKAKQD 1513
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 195 PNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSE-- 252
P A K S S + LF + R ++ NP+ G+++K +G W E K Y+ +E
Sbjct: 1447 PKAVK-SKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVV 1505
Query: 253 -KDKARYD 259
+KA+ D
Sbjct: 1506 AVEKAKQD 1513
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 195 PNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSE-- 252
P A K S S + LF + R ++ NP+ G+++K +G W E K Y+ +E
Sbjct: 77 PKAVK-SKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVV 135
Query: 253 -KDKARYD 259
+KA+ D
Sbjct: 136 AVEKAKQD 143
>Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical
protein W02D9.3 protein.
Length = 386
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 194 DPNAPKRSLSAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEK 253
DPNAPKR+ S + F R+ + +I L W E + + +++
Sbjct: 123 DPNAPKRNRSGYVHFIIHRRASY--SKAVMSQREINISLAADWQKLTAEERIPFQQRADE 180
Query: 254 DKARYDREMTAYKK 267
+K +Y M YKK
Sbjct: 181 EKVKYLELMEEYKK 194
>Z70780-13|CAD18872.2| 368|Caenorhabditis elegans Hypothetical
protein F46B6.3b protein.
Length = 368
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 137 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPN 196
A SKK ++ M+EKEK+R+ + + K R + Q ++ K K R++ + P
Sbjct: 222 ATTSKKDLKKEKPMTEKEKERWEKQDAKRKERNMIRKQKFLDEKKKKHEEREQDGPRVPR 281
Query: 197 APKR 200
K+
Sbjct: 282 DKKK 285
>Z70780-12|CAA94820.2| 329|Caenorhabditis elegans Hypothetical
protein F46B6.3a protein.
Length = 329
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 137 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPN 196
A SKK ++ M+EKEK+R+ + + K R + Q ++ K K R++ + P
Sbjct: 222 ATTSKKDLKKEKPMTEKEKERWEKQDAKRKERNMIRKQKFLDEKKKKHEEREQDGPRVPR 281
Query: 197 APKR 200
K+
Sbjct: 282 DKKK 285
>AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical
protein Y76B12C.4 protein.
Length = 252
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 141 KKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKR 200
K+ AE+ EKEK++ HE E DK + E + K K ++++ K+ K
Sbjct: 67 KEAAEK-EKEKEKEKEKTHEKNEADKEEKEAEKEEEKEEKPPKEVTEEKEKEKEREKTKT 125
Query: 201 SLSAFFLFCNDERSKVKAGNPEYTMGDIAKE 231
E + K + + GD++KE
Sbjct: 126 KDELEEAPREKETMEKKQKSKDEDEGDLSKE 156
>AF099003-3|ABA00149.1| 759|Caenorhabditis elegans Hypothetical
protein Y59C2A.3 protein.
Length = 759
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 145 ERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRK-RQQMKDPNAPK 199
+R++ MSE+EK+ ++ K+ FD PK ++ R+QMKD NA K
Sbjct: 623 DRYHKMSEEEKRLHNQRRRYKKYGFD--------PKSREINLEDVREQMKDANAKK 670
>AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical
protein C50A2.2 protein.
Length = 557
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 151 SEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRK---RQQMKDPNAPKR 200
S K QR M +++K L++ K K+ +K R Q DP+APK+
Sbjct: 126 SSKPAQRTEPMTQREKFDAILQISEISLEKQYKLTNKKVPRRSQFTDPDAPKK 178
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 29.1 bits (62), Expect = 4.0
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 145 ERWNTMSEKEKQRFHE--MAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSL 202
E +N+M+EKEK++ H+ M+ D + K+ K + + + + KD K+S
Sbjct: 242 EFFNSMTEKEKKKLHKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKKNKKSK 301
Query: 203 SAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKY---DALSEKDKARYD 259
S D+ S + E + + + +R + PE ++KY + LSE D+ +
Sbjct: 302 SRE----TDDDS--DGSDSEDDWKEKSSKRIKREVESSPEYRSKYIKQEVLSE-DENSHG 354
Query: 260 REMTAYKK 267
R+ ++ K+
Sbjct: 355 RKDSSRKR 362
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 29.1 bits (62), Expect = 4.0
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 145 ERWNTMSEKEKQRFHE--MAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSL 202
E +N+M+EKEK++ H+ M+ D + K+ K + + + + KD K+S
Sbjct: 242 EFFNSMTEKEKKKLHKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKKNKKSK 301
Query: 203 SAFFLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKY---DALSEKDKARYD 259
S D+ S + E + + + +R + PE ++KY + LSE D+ +
Sbjct: 302 SRE----TDDDS--DGSDSEDDWKEKSSKRIKREVESSPEYRSKYIKQEVLSE-DENSHG 354
Query: 260 REMTAYKK 267
R+ ++ K+
Sbjct: 355 RKDSSRKR 362
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 130 PDVSVIFAAFSKKCAERWNTMSEKE-KQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRK 188
P +V K +R M + K ++ +M++ K R E + PK +K G+
Sbjct: 1258 PKKNVCTEVLPSKDGQRIEPMLDAATKAKYEKMSQPKKERVKKEPKEPKEPKKVKKEGQD 1317
Query: 189 RQQMKDPNAPK 199
++ P APK
Sbjct: 1318 IKKFMSPAAPK 1328
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 130 PDVSVIFAAFSKKCAERWNTMSEKE-KQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRK 188
P +V K +R M + K ++ +M++ K R E + PK +K G+
Sbjct: 1258 PKKNVCTEVLPSKDGQRIEPMLDAATKAKYEKMSQPKKERVKKEPKEPKEPKKVKKEGQD 1317
Query: 189 RQQMKDPNAPK 199
++ P APK
Sbjct: 1318 IKKFMSPAAPK 1328
>Z99281-28|CAE18029.1| 377|Caenorhabditis elegans Hypothetical
protein Y57G11C.46 protein.
Length = 377
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 152 EKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCND 211
+ EK++FHEM + + L + + + +KR + P A K +F ++
Sbjct: 288 DPEKKQFHEMVQNIFPLYTLLSSSLWLVMMISEKKKKRIGLVPPEARKDEKDVYFKSLDN 347
Query: 212 ERSKVKAGNPEYTM 225
+ SKV + P M
Sbjct: 348 QWSKVPSQKPSVKM 361
>U70852-12|AAK29819.1| 204|Caenorhabditis elegans Hmg protein 5
protein.
Length = 204
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 213 RSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKYDALSEKDKAR 257
+ KA + D+ KEL +W A K KY LS+ A+
Sbjct: 42 KENFKANTSDMKRTDLMKELSGKWKALSISEKDKYTELSKNYNAQ 86
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 121 CREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAE 163
C + HK DVS + + + C +SEKEK +M+E
Sbjct: 38 CAQLHKDIRQDVSKMMSKIDEVCGRLEALISEKEKVLLEQMSE 80
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 121 CREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAE 163
C + HK DVS + + + C +SEKEK +M+E
Sbjct: 38 CAQLHKDIRQDVSKMMSKIDEVCGRLEALISEKEKVLLEQMSE 80
>U64833-4|AAB04817.1| 380|Caenorhabditis elegans Hypothetical
protein B0507.7 protein.
Length = 380
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 148 NTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFL 207
NT+ EK Q ++ +QD ++F + + KD+K + K +++ D K L+
Sbjct: 129 NTVLEKNSQEKKKLEKQDPNKFIIRQMD----KDLKNKINKLRKITDETEHKLELANGLS 184
Query: 208 FCNDERSKVKAGNPE--YTMGDIAKELG 233
D+ K+ N E +T+ D LG
Sbjct: 185 KYADKNQKILNLNQELHHTILDGENRLG 212
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,759,958
Number of Sequences: 27539
Number of extensions: 194277
Number of successful extensions: 787
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 70
length of query: 297
length of database: 12,573,161
effective HSP length: 81
effective length of query: 216
effective length of database: 10,342,502
effective search space: 2233980432
effective search space used: 2233980432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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