GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001132-TA|BGIBMGA001132-PA|IPR000910|HMG1/2 (high
mobility group) box, IPR000135|High mobility group box HMG1 and HMG2,
IPR009071|High mobility group box
         (297 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/102 (14%), Positives = 41/102 (40%)

Query: 119 QTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVP 178
           ++C  +  ++Y +    +     +  +     + +++       EQ+ ++ + E + Y  
Sbjct: 2   RSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRE 61

Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGN 220
               + R RK ++    +    SLS  + + N+   K+   N
Sbjct: 62  TSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNN 103


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/102 (14%), Positives = 41/102 (40%)

Query: 119 QTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVP 178
           ++C  +  ++Y +    +     +  +     + +++       EQ+ ++ + E + Y  
Sbjct: 2   RSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRE 61

Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGN 220
               + R RK ++    +    SLS  + + N+   K+   N
Sbjct: 62  TSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNN 103


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/102 (14%), Positives = 41/102 (40%)

Query: 119 QTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVP 178
           ++C  +  ++Y +    +     +  +     + +++       EQ+ ++ + E + Y  
Sbjct: 2   RSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRE 61

Query: 179 PKDMKVRGRKRQQMKDPNAPKRSLSAFFLFCNDERSKVKAGN 220
               + R RK ++    +    SLS  + + N+   K+   N
Sbjct: 62  TSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNN 103


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 150 MSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFLFC 209
           + ++  QR H +     H     +Q++  P   + + ++RQQ +     +R L       
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ---EERRL------- 182

Query: 210 NDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKA 245
             +  KV+ G  E+  G  A++  +   + D  T A
Sbjct: 183 RPDEIKVEVGEDEFANGGAARDESKA-GSTDASTPA 217


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,790
Number of Sequences: 429
Number of extensions: 2419
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 297
length of database: 140,377
effective HSP length: 57
effective length of query: 240
effective length of database: 115,924
effective search space: 27821760
effective search space used: 27821760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)