Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001131-TA|BGIBMGA001131-PA|IPR001247|Exoribonuclease
         (375 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    27   0.29 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.5  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   2.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 28  NFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQP 66
           N  + RK  ++ GSEY   IVSLGE K ++   CE  +P
Sbjct: 847 NLYDARKPYVN-GSEYHPSIVSLGEYKCVT-CKCENGKP 883


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 301 EHMLALSRKDLNIQLKHY 318
           EH LA  R+DL I L H+
Sbjct: 191 EHRLAYFREDLGINLHHW 208


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 181 DPIPTVLYHYPVCTTFALYSNDILLTDPNFLE 212
           +P P   Y Y +    AL  +D +L+DP+ ++
Sbjct: 144 NPTPPPHYTYQIIPYEALNVDDHILSDPSLMD 175


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,292
Number of Sequences: 317
Number of extensions: 3800
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 375
length of database: 114,650
effective HSP length: 58
effective length of query: 317
effective length of database: 96,264
effective search space: 30515688
effective search space used: 30515688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)