Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001131-TA|BGIBMGA001131-PA|IPR001247|Exoribonuclease
(375 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60500.2 68416.m06767 3' exoribonuclease family protein simil... 188 4e-48
At3g60500.1 68416.m06766 3' exoribonuclease family protein simil... 188 4e-48
At3g12990.1 68416.m01618 3' exoribonuclease family protein simil... 182 3e-46
At1g60080.1 68414.m06769 3' exoribonuclease family domain 1-cont... 77 1e-14
At3g07750.2 68416.m00940 3' exoribonuclease family domain 1-cont... 69 4e-12
At3g07750.1 68416.m00939 3' exoribonuclease family domain 1-cont... 69 4e-12
At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to ... 33 0.24
At4g21190.1 68417.m03064 pentatricopeptide (PPR) repeat-containi... 33 0.41
At5g60030.1 68418.m07527 expressed protein 32 0.72
At5g44290.1 68418.m05421 protein kinase family protein contains ... 31 0.95
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 30 2.2
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C... 30 2.9
At2g20160.1 68415.m02357 E3 ubiquitin ligase SCF complex subunit... 30 2.9
At2g16270.1 68415.m01863 expressed protein and genefinder; expr... 30 2.9
At2g13720.1 68415.m01516 hypothetical protein weak similarity to... 30 2.9
At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (ME... 29 3.8
At1g76050.2 68414.m08832 pseudouridine synthase family protein c... 29 3.8
At1g76050.1 68414.m08831 pseudouridine synthase family protein c... 29 3.8
At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA methyltran... 29 5.1
At4g22260.1 68417.m03220 alternative oxidase, putative / immutan... 29 6.7
At4g10200.1 68417.m01672 hAT dimerisation domain-containing prot... 29 6.7
At3g09650.1 68416.m01144 pentatricopeptide (PPR) repeat-containi... 29 6.7
At1g70130.1 68414.m08070 lectin protein kinase, putative similar... 29 6.7
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 29 6.7
At1g56660.1 68414.m06516 expressed protein 29 6.7
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 28 8.8
At3g50550.1 68416.m05528 expressed protein isoform contains a n... 28 8.8
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica... 28 8.8
>At3g60500.2 68416.m06767 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 188 bits (459), Expect = 4e-48
Identities = 112/362 (30%), Positives = 196/362 (54%), Gaps = 21/362 (5%)
Query: 10 EKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQI 69
E F++ + R+DGR + RKL I FG EYG V LG+T ++ VT ++ QP +
Sbjct: 15 ESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGFVTAQLVQPYKD 74
Query: 70 RPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 129
RPNEG + + E +PMA P FE R + V L R++++ ++S+ +D ESLC++ + V
Sbjct: 75 RPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMV 134
Query: 130 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFT---RDGDRVIIHTLTEKDPIPTV 186
WS+RI++ +L++ GNL + A+IA LA++ FRRPD T +G VIIH L E++P+P +
Sbjct: 135 WSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPLI 194
Query: 187 LYHYPVCTTFALYS-NDILLTDPNFLEESVCTSNTEEGINTAGGLLVL------GMNQYR 239
++H P+ TF ++ +I++ DP ++EE+V +N G + + G+NQ
Sbjct: 195 IHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGVNQSV 254
Query: 240 EV-CLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDII 298
+ CL + A T+ I+ + + A C++ ++ +K + L K E + +
Sbjct: 255 ILHCLRLASSRAAATTKIIREEV--EAYNCERSLQKVK----RHPTL-AKSEVSGPTVAV 307
Query: 299 TTEHMLALSR-KDLNIQLKHYDVTELDEKDEEMFSDED--DIKPEPSKYDVVATVPNTAE 355
EH + + + I +H + +L ++ +E+ + K PS +D + +
Sbjct: 308 KEEHRKSSDQERAAEISREHVERLKLSTEEVRSSKEEEAANFKGGPSNWDPYSEAMDVDS 367
Query: 356 LK 357
LK
Sbjct: 368 LK 369
>At3g60500.1 68416.m06766 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 188 bits (459), Expect = 4e-48
Identities = 112/362 (30%), Positives = 196/362 (54%), Gaps = 21/362 (5%)
Query: 10 EKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQI 69
E F++ + R+DGR + RKL I FG EYG V LG+T ++ VT ++ QP +
Sbjct: 15 ESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGFVTAQLVQPYKD 74
Query: 70 RPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 129
RPNEG + + E +PMA P FE R + V L R++++ ++S+ +D ESLC++ + V
Sbjct: 75 RPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMV 134
Query: 130 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFT---RDGDRVIIHTLTEKDPIPTV 186
WS+RI++ +L++ GNL + A+IA LA++ FRRPD T +G VIIH L E++P+P +
Sbjct: 135 WSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPLI 194
Query: 187 LYHYPVCTTFALYS-NDILLTDPNFLEESVCTSNTEEGINTAGGLLVL------GMNQYR 239
++H P+ TF ++ +I++ DP ++EE+V +N G + + G+NQ
Sbjct: 195 IHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGVNQSV 254
Query: 240 EV-CLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDII 298
+ CL + A T+ I+ + + A C++ ++ +K + L K E + +
Sbjct: 255 ILHCLRLASSRAAATTKIIREEV--EAYNCERSLQKVK----RHPTL-AKSEVSGPTVAV 307
Query: 299 TTEHMLALSR-KDLNIQLKHYDVTELDEKDEEMFSDED--DIKPEPSKYDVVATVPNTAE 355
EH + + + I +H + +L ++ +E+ + K PS +D + +
Sbjct: 308 KEEHRKSSDQERAAEISREHVERLKLSTEEVRSSKEEEAANFKGGPSNWDPYSEAMDVDS 367
Query: 356 LK 357
LK
Sbjct: 368 LK 369
>At3g12990.1 68416.m01618 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 307
Score = 182 bits (444), Expect = 3e-46
Identities = 92/274 (33%), Positives = 157/274 (57%), Gaps = 15/274 (5%)
Query: 10 EKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQI 69
E F++ + R+DGR + RKL I FG EYG V LG+T +++ VT ++ QP +
Sbjct: 15 ESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAFVTAQLVQPYKD 74
Query: 70 RPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 129
RP+EG + E +PMA P FE + V L R++++ ++S+ +D ESLC++ + V
Sbjct: 75 RPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLV 134
Query: 130 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDR---VIIHTLTEKDPIPTV 186
WS+RI++ +L++ GNL + A++A LA++ FRRPD T GD VIIH E++P+P +
Sbjct: 135 WSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLI 194
Query: 187 LYHYPVCTTFALYS-NDILLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYREVCLLD 245
++H P+ TF ++ IL+ DP ++EE+V G + + +N ++C +
Sbjct: 195 IHHLPIAFTFGFFNKGSILVMDPTYVEEAVMC-----------GRMTVTVNANGDICAIQ 243
Query: 246 LTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAV 279
G +++ L A+ + +II++AV
Sbjct: 244 KPGEEGVNQSVILHCLRLASSRASATTKIIRDAV 277
>At1g60080.1 68414.m06769 3' exoribonuclease family domain
1-containing protein similar to SP|Q96B26 Exosome
complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal RNA
processing protein 43) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 302
Score = 77.4 bits (182), Expect = 1e-14
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 19/221 (8%)
Query: 13 FIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCEVAQPKQI 69
F ++ +S+ R DGR + R ++ G + G + +G T +L+ + EV P
Sbjct: 27 FFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPSTD 86
Query: 70 RPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 129
P+EG I + + P+ +P R + + + L S IDL+ LC+V +
Sbjct: 87 SPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKAA 146
Query: 130 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFT-RDGDRVIIHT---------LTE 179
W ++I L+ DG L + A +A +A+ ++ + P D R++ T +TE
Sbjct: 147 WMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALITE 206
Query: 180 KDPI-----PTVLYHYPVCTTFALYSNDILLTDPNFLEESV 215
K+ + L + P T L+ N +L DP EES+
Sbjct: 207 KEAVNKEKRKLTLKNIPFSLTCILHKN-YILADPTTEEESI 246
>At3g07750.2 68416.m00940 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 69.3 bits (162), Expect = 4e-12
Identities = 68/283 (24%), Positives = 124/283 (43%), Gaps = 21/283 (7%)
Query: 6 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCE 62
LS E++FI+ ++Q R DGR R + + G G V +G T +++ V E
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 63 VAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKC-----ID 117
+ +P ++P++G + + ++ +P A P F +L+ L L++C K I+
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122
Query: 118 LESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDF-----TRDGDRV 172
L SL I + W L I+ V++ DGNL + A A++ + P D ++
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQP 182
Query: 173 IIHTLTEKDPIPTVLYHYPVCTTFALYSNDILLTDPNFLEESVCTSNTEEGINTAG---G 229
I +++++ + PV T ++ D EES +S +N G G
Sbjct: 183 EI-DISDEEYLQFDTSSVPVIVTLTKVGTHYIV-DATAEEESQMSSAVSISVNRTGHICG 240
Query: 230 LLVLGMNQYREVCLLDLTGAAIYTSNIVHKAL---LSAADKCK 269
L + +LD+ A + + + L +SAA+ C+
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACE 283
>At3g07750.1 68416.m00939 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 69.3 bits (162), Expect = 4e-12
Identities = 68/283 (24%), Positives = 124/283 (43%), Gaps = 21/283 (7%)
Query: 6 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCE 62
LS E++FI+ ++Q R DGR R + + G G V +G T +++ V E
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 63 VAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKC-----ID 117
+ +P ++P++G + + ++ +P A P F +L+ L L++C K I+
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122
Query: 118 LESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDF-----TRDGDRV 172
L SL I + W L I+ V++ DGNL + A A++ + P D ++
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQP 182
Query: 173 IIHTLTEKDPIPTVLYHYPVCTTFALYSNDILLTDPNFLEESVCTSNTEEGINTAG---G 229
I +++++ + PV T ++ D EES +S +N G G
Sbjct: 183 EI-DISDEEYLQFDTSSVPVIVTLTKVGTHYIV-DATAEEESQMSSAVSISVNRTGHICG 240
Query: 230 LLVLGMNQYREVCLLDLTGAAIYTSNIVHKAL---LSAADKCK 269
L + +LD+ A + + + L +SAA+ C+
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACE 283
>At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to
exonuclease RRP41 [Arabidopsis thaliana] GI:6164938
Length = 241
Score = 33.5 bits (73), Expect = 0.24
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 20 QGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEV--TCEVAQPKQIRPNE- 73
+G RLDGR FNE R++ G G + +G TK+++ V E+ Q + N+
Sbjct: 7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDH 66
Query: 74 GIIFMNVELNPMAA----PQFEANRQTDLTVYLVRLLEKC 109
++ + + Q R T+L++ + + +E C
Sbjct: 67 AVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEAC 106
>At4g21190.1 68417.m03064 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 307
Score = 32.7 bits (71), Expect = 0.41
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 277 NAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDD 336
NA+A+D+ L + E N + EH+ RK N + Y ++ +K E+F+D ++
Sbjct: 134 NALAEDNRLDEAEELWNK---LFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEE 190
Query: 337 --IKPEPSKYDVVATVPNTAELKSKEGK 362
+KP + +V V E+K K K
Sbjct: 191 LGVKPNVAIVSMVGKVFVKLEMKDKYEK 218
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 31.9 bits (69), Expect = 0.72
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 266 DKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNI--QLKHYDVTEL 323
+K K+ +E + + + + ++K +K N D++ + L +K I + K+ D +
Sbjct: 167 EKVKEKLEDEQKSADRKERKKKKSKKNNDEDVVDEKEKLEDEQKSAEIKEKKKNKDEDVV 226
Query: 324 DEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSE 364
DEK++E DE + K + + E+ S+E KS+
Sbjct: 227 DEKEKEKLEDEQ--RSGERKKEKKKKRKSDEEIVSEERKSK 265
>At5g44290.1 68418.m05421 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 644
Score = 31.5 bits (68), Expect = 0.95
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 316 KHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGK 362
KH ++ E+ + DE+ D+D PE K + +P + E SKE +
Sbjct: 65 KHQEIAEIGDTDED--EDDDHHPPEELKREPSVVIPPSPETVSKEAE 109
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 16 KIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVT 60
+++S G R+DGR+ +E R + + +G + S G+T++L VT
Sbjct: 357 RMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVT 404
>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
profile PF00888: Cullin family
Length = 792
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 86 AAPQFEANRQTDLTVYLVRLLEKCYKD--SKCIDLESLCIVVEEKVWSLRINIKVL 139
AA Q + TDLTV+L R +EKC++D + + + S+ + ++ K N++ L
Sbjct: 149 AALQSLVGQNTDLTVFLSR-VEKCWQDFCDQMLMIRSIALTLDRKYVIQNPNVRSL 203
>At2g20160.1 68415.m02357 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At17), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 150
Score = 29.9 bits (64), Expect = 2.9
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 245 DLTGAAIYTSNIVHKALLSAADKCKKYVEII--KNAVAKDDNLRQKREKIN--FSDIITT 300
D AI N+ K L + CKK+V+ + KN D K ++ F +
Sbjct: 36 DCADKAIRLQNVTGKILAIIIEYCKKHVDDVEAKNEFVTWDAEFVKNIDMDTLFKLLDAA 95
Query: 301 EHMLALSRKDLNIQ-LKHYDVTELDEKDEEMFSDEDDIKPE 340
++++ + K+L Q + Y + + E+F+ E+D PE
Sbjct: 96 DYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPE 136
>At2g16270.1 68415.m01863 expressed protein and genefinder;
expression supported by MPSS
Length = 759
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 259 KALLSAADKCKKYVEIIKNAVAKDDNLR---QKREKINFSDIITTEHMLALSRKDLNIQL 315
K +LS ++ + +K + +DDN R + + ++FSD++ H + + + ++
Sbjct: 97 KRVLSDKNEMSRSFSDVKGLILEDDNKRNHHRAKSCVSFSDVL---HTICIDDEKKFVES 153
Query: 316 KHYDVTELDEKD 327
VT+ DEK+
Sbjct: 154 HDMTVTDFDEKE 165
>At2g13720.1 68415.m01516 hypothetical protein weak similarity to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3)
{Arabidopsis thaliana}
Length = 223
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 257 VHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALS----RKDLN 312
+ A ++ DK KK++E D K+++I +SD +T + L + RK +N
Sbjct: 131 LENAFGTSEDKQKKWIEKYVPGTFLDS----KKQQIMYSDFVTKKLKLYFTTSNQRKHIN 186
Query: 313 IQLKHYDVTELDEKDEEM 330
I K+Y + + D+K +++
Sbjct: 187 INKKNYILKKNDKKSKKI 204
>At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase
(METII) nearly identical to cytosine-5 methyltransferase
(METII) [Arabidopsis thaliana] GI:6523846
Length = 1519
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 313 IQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSD 371
I ++ + EL+E +EE ++EDD PE ++ + V + N+ K +G SE +E+ D
Sbjct: 638 INAENVEEEELEEVEEEDENEEDD--PEENELEAV-EIQNSPTPKKIKGISEDMEIKWD 693
>At1g76050.2 68414.m08832 pseudouridine synthase family protein
contains Pfam profiles: PF00849 RNA pseudouridylate
synthase, PF01479: S4 domain
Length = 430
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 322 ELDEKDEEMFSDEDDIKPEPSKY 344
E D+ DEE FSD++++ PS Y
Sbjct: 199 EDDDSDEETFSDDEEMTTSPSSY 221
>At1g76050.1 68414.m08831 pseudouridine synthase family protein
contains Pfam profiles: PF00849 RNA pseudouridylate
synthase, PF01479: S4 domain
Length = 313
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 322 ELDEKDEEMFSDEDDIKPEPSKY 344
E D+ DEE FSD++++ PS Y
Sbjct: 199 EDDDSDEETFSDDEEMTTSPSSY 221
>At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to SP|Q9P804
N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC
2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
Length = 691
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 291 KINFSDIITTEHMLALSRKDLNIQL--KHYDVTELDEKDEEMFSDEDDIKPEP 341
KI IT++H+ L + +N L H + + +E++EE +ED I+ EP
Sbjct: 624 KIRAGRTITSKHVSLLGHEAVNGHLNNNHKEAGDEEEEEEEEEPEEDIIEGEP 676
>At4g22260.1 68417.m03220 alternative oxidase, putative / immutans
protein (IM) identical to IMMUTANS from Arabidopsis
thaliana [gi:4138855]; contains Pfam profile PF01786
alternative oxidase
Length = 351
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
LR+ R +++S H L LS + L ++ H + + DEE E+ K E S
Sbjct: 21 LRRSRAAVSYSSSHRLLHHLPLSSRRLLLRNNHRVQATILQDDEEKVVVEESFKAETSTG 80
Query: 345 DVVATVPNTAELKSKEGKSEWI 366
PN + S WI
Sbjct: 81 TEPLEEPNMSS-SSTSAFETWI 101
>At4g10200.1 68417.m01672 hAT dimerisation domain-containing protein
/ transposase-related low similarity to transposase
[Ipomoea purpurea] AB004906 GI:4063770
Length = 733
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 251 IYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQ------KREKINFSDIITTEHML 304
++T N V KAL S + + +K V+ N R+ K E ++ + E
Sbjct: 469 LFTMNTVSKALQSENIDIELALVQLKGLVSYLQNYRETGFQEAKAEATLIAESMDIEPKF 528
Query: 305 ALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIK 338
+ RK + + +H+D ++ + E+ S+E++ K
Sbjct: 529 PVKRKRIIKRKRHFDEEMENDVETELLSEEENFK 562
>At3g09650.1 68416.m01144 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 778
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 292 INFSDIITTEHMLAL---SRKDLNIQLKHYDVTELDEKDEEMFSDEDD 336
+ F D+ T E ++ R+DL L+ + +L EK+EE D++D
Sbjct: 317 VGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEEAEDDED 364
>At1g70130.1 68414.m08070 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 656
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 131 SLRINIKVLNHDGNLTECASIATLASIAHFRRPDFT-------RDGDRVIIHTLTEKDPI 183
S+ I +K ++HD +A +A+I R PD R G+ +++ K +
Sbjct: 357 SIPIAVKKISHDSRQGMREFLAEIATIGRLRHPDLVRLLGYCRRKGELYLVYDFMPKGSL 416
Query: 184 PTVLYHYP 191
LY+ P
Sbjct: 417 DKFLYNQP 424
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 324 DEKDEEMFSDEDDIKPEPSKYDVVATV--PNTAELKSKEGK 362
D+ D+E S++D +K EP+K VA V P + ++GK
Sbjct: 92 DDSDKEDESEDDAVKSEPAKLKTVAKVTRPQGRYKRREKGK 132
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 281 KDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKD-EEMFSDEDDIKP 339
+D ++ K+EK D+ + + + ++K D + +K+ +E ++E KP
Sbjct: 208 EDKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKP 267
Query: 340 EPSKYDV-VATVPNTAELKSKEGKSEWIEVSSDSGE 374
+ K + +T +LK K+GK E E D G+
Sbjct: 268 DKEKKEKDESTEKEDKKLKGKKGKGEKPE-KEDEGK 302
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 315 LKHYDVTELDEKDEEMF--SDEDDIKP 339
L+ Y+VT+ ++D+E+ SDEDDI P
Sbjct: 63 LEDYEVTDDSDEDDEVSDGSDEDDISP 89
>At3g50550.1 68416.m05528 expressed protein isoform contains a
non-consensus AT donor site at intron 1
Length = 95
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 319 DVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDSGED 375
D+ DE+ +E D+DD E S D N + S+ + ++ + +SDS +D
Sbjct: 9 DIYSSDEEYDEDDDDDDDTDGESSDEDDEEEDRNLSGDDSESSEDDYTDSNSDSDDD 65
>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
thaliana)
Length = 616
Score = 28.3 bits (60), Expect = 8.8
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 261 LLSAADKCKKYVEIIKNAVAKDDNLRQKR--EK-INFSDIITTEHMLALSRKDLNI 313
L+ A KCKK ++ + A + RQ R EK + D I TE+ L +RK L++
Sbjct: 261 LMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDCIATENFLEGNRKALDV 316
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,158,290
Number of Sequences: 28952
Number of extensions: 390691
Number of successful extensions: 1282
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1259
Number of HSP's gapped (non-prelim): 31
length of query: 375
length of database: 12,070,560
effective HSP length: 82
effective length of query: 293
effective length of database: 9,696,496
effective search space: 2841073328
effective search space used: 2841073328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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