Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001131-TA|BGIBMGA001131-PA|IPR001247|Exoribonuclease
(375 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 202 8e-53
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 93 8e-20
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 35 0.016
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 35 0.022
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.20
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 30 0.61
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 29 0.81
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 29 1.1
SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c... 29 1.1
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 28 1.9
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 28 2.5
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 28 2.5
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 28 2.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 2.5
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 4.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 5.7
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 5.7
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 5.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 5.7
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 7.5
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 10.0
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 26 10.0
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 10.0
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 202 bits (492), Expect = 8e-53
Identities = 101/287 (35%), Positives = 164/287 (57%), Gaps = 16/287 (5%)
Query: 3 DTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCE 62
+T L+N K F+ + +G RLDGR ++ R L+I FG EYG VS G T++++ +T E
Sbjct: 6 ETSLNN--KEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTE 63
Query: 63 VAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLC 122
+ +P RP +GI + EL P+A FEA R +D + + RL+EK + S +D ESLC
Sbjct: 64 ITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLC 123
Query: 123 IVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDP 182
I+ +K W +R ++ +NHDGNL + A IA +A++ HFRRP+ T G+ V +H + E+ P
Sbjct: 124 IISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVP 183
Query: 183 IPTVLYHYPVCTTFALYSN-DILLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYREV 241
+P + H P+C TF+ ++N ++ + D EE +C G + + +N+ REV
Sbjct: 184 VPLSILHMPICVTFSFFNNGELAIVDATLEEEDLC-----------NGSMTITLNKNREV 232
Query: 242 CLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQK 288
C + G I + + +A D +I+ A+ D++LR+K
Sbjct: 233 CQIYKAGGIIIDPSKIISCAKTAFDIAVSVCSVIQQAL--DEDLRKK 277
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 92.7 bits (220), Expect = 8e-20
Identities = 63/213 (29%), Positives = 113/213 (53%), Gaps = 11/213 (5%)
Query: 11 KNFIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCEVAQPK 67
+ ++ +++Q R DGR+ +E R++ I+ + G I+ GE + + E+A+P
Sbjct: 23 EQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPF 82
Query: 68 QIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEE 127
+ PNEG I N+EL+P+ + +F+ +DL + + L + + S I+L+SLCI ++
Sbjct: 83 ENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKK 142
Query: 128 KVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGD--RVI-IHTLTEKDPIP 184
W L +I LN+DG+ + A A A++ + P D D RVI TLT +
Sbjct: 143 AAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTLTRPVQLS 202
Query: 185 TVLYHYPVCTTFALYSNDILLTDPNFLEESVCT 217
T + + +++++ +D LL DP EE + T
Sbjct: 203 TEVRSF----SWSVF-DDKLLADPTDEEEDLST 230
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 35.1 bits (77), Expect = 0.016
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 196 FALYSNDILLTDPNFLEESVCTSNTEEGIN-TAGGLLVLG--MNQYREVCLLDLTGAAIY 252
F LY N L L E C NTE+ + GG M +Y V + +T A+
Sbjct: 573 FLLYENHFLEIFNRHLTEGDCNRNTEKDVKCVRGGFFSYSSKMYKYDRVSIPVITRASSS 632
Query: 253 TSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKI 292
+ ++ L +K KY I K +A+ NL + +K+
Sbjct: 633 RNLLITMNCLRVLEKVCKYSNIRKEIIAR-SNLHENLKKL 671
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 34.7 bits (76), Expect = 0.022
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 20 QGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCEVAQPKQIRPNEGII 76
+G R DGR ++E R G SE G + LG TK+L V + +
Sbjct: 10 EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRT 69
Query: 77 FMNVELN 83
F+NVE+N
Sbjct: 70 FVNVEIN 76
>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 274
Score = 31.5 bits (68), Expect = 0.20
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 178 TEKDPI--PTVLYHYPVCTTFALY-SNDILLTDPNFLEESVCTSNTEEGINTAGGLLVLG 234
TE +P+ V + Y C + + ND LL D + + +C S+T+ G+ G+L +
Sbjct: 50 TEAEPVLEHRVTWEYETCVSVRMIIDNDNLLKDKFLILQVLCDSHTDSGVIRL-GILKIN 108
Query: 235 MNQY 238
+ +Y
Sbjct: 109 LTEY 112
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 29.9 bits (64), Expect = 0.61
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 257 VHKALLSAADKCKKYVEIIKNAVAKDDNLRQK----REKINFSDIITTEHMLALSRKDLN 312
+++ + +AAD+ I KN + +QK +EKINF + + EH +S + +
Sbjct: 832 LNERISAAADELSSMESINKNQANELKLAKQKCSNLQEKINFGNKLAKEHTEKISSLEKD 891
Query: 313 IQLKHYDVTELDEKDEEMFSDEDDIK 338
++ + L ++ + + S+ D +K
Sbjct: 892 LEAATKTASTLSKELKTVKSENDSLK 917
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 29.5 bits (63), Expect = 0.81
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 310 DLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVS 369
D ++ + + + E ++E DE + + E D+ VP+ A + +++ S+ S
Sbjct: 171 DEDLAIDGFGAGAIAENEDESSQDESESEEED---DITEPVPSFANISTQDFNSDSAAGS 227
Query: 370 SDSGED 375
SDS ED
Sbjct: 228 SDSEED 233
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 323 LDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSE 364
+DE+DEE ++D P++ D+V TV E +E +SE
Sbjct: 123 VDEEDEEEEESDEDYDLSPTEEDLVETVSGDEE-SEEESESE 163
>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 147
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 313 IQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEW 365
++++ +L + D+E+F D + PE K A+ N E+KS +GK+ W
Sbjct: 36 LEMRKGSELKLTKYDDEIFEDLINTFPE-FKDPKTASFVNEDEMKSAKGKAAW 87
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 322 ELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKS 363
E DE+ EE S+++D + E S+ DV AE +EG S
Sbjct: 466 EGDEEMEEALSEDEDFQAE-SESDVAEEYDENAESSDEEGAS 506
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 324 DEKDEEMFSDED-DIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDS 372
+ K E+F +D D++P P V ++P A K GKS + SS+S
Sbjct: 542 EHKKTEVFDQDDTDLEPVPRLMSKVESIPAGAS-SDKSGKSSISKKSSNS 590
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 231 LVLGMNQYREVCLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAK 281
L+ G+ ++ + +D+T Y +NI++K + +++CK Y+E+ A K
Sbjct: 226 LISGIFKHLKSKTIDVTE---YYANIINKNAVLLSERCKAYIELSGKAQIK 273
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 27.9 bits (59), Expect = 2.5
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 292 INFSDIITTE--HMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVAT 349
++FS II + H+L ++ +DL DE ++E+ ++D+I+ KYD +
Sbjct: 429 LSFSKIIKVDGTHLLRITFRDLEFN---------DEDEDEI--EQDEIERVLQKYDNIPL 477
Query: 350 VPNTAELKSKEGKSEWIEVSSD 371
+ LK K + ++I+ D
Sbjct: 478 LNEEQALKEKNVEKDFIQWKDD 499
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 2.5
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 251 IYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDN---LRQKREKINFSD-IITTEHMLAL 306
I T ++ H+A A+ + ++ V K+DN + +E IN D + T+
Sbjct: 12 IQTGSLYHRATFGLAESLEPPTIRVRTRVGKNDNGEYVFTNKEDINMEDPNVKTDETKVE 71
Query: 307 SRKDLNIQLKHYDVTELDEKDEEMFSD--EDDIKPEPSK 343
+ + + Q + +VTE S+ DD P P++
Sbjct: 72 TSESTSEQPSNSNVTEEKNMGSSFHSECKVDDFTPLPNE 110
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 4.3
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 280 AKDDNLRQKREKINFSDIITTEHMLALSR-KDLNIQLKHYDVTELDEKDEEMFSDEDDIK 338
AK+ + + +K +D TE + + K+ +++ K D E+D+K+E+ S E K
Sbjct: 460 AKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADK 519
Query: 339 PEPSKYDVVATVPNTAELKSKEGKSEWIE 367
E + P + K K+E ++
Sbjct: 520 VEQTDSKDTNEKPAKDDNKEANEKAEKVD 548
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 288 KREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDD 336
K E +N+ DII E M + ++ + + E + ++EE +++D
Sbjct: 936 KAEDLNWDDIIPEEEMERIEEEERMLAAQRAKEEERERREEEERENDED 984
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 102 LVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLN 140
LVR+L K D + + +++LC +V + + I I ++N
Sbjct: 1014 LVRMLGKSNGDLRAVIMDTLCAIVSQLGYDYSIFIPMVN 1052
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 5.7
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 270 KYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEE 329
+Y ++K+ D +L + R + + EH + LS N+Q++H +++ L K E+
Sbjct: 879 EYDILLKSEHELDSSLEEMRNRHKSLN----EHFIMLSDSMANLQVEHENMSALLLK-EK 933
Query: 330 MFSDEDDIKPEPSKYDVVATVPNTAELKSK 359
M+ ++ K ++ + A+ KS+
Sbjct: 934 MYLKNQTVEQASLKSEIASLNSQLAKQKSE 963
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 5.7
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 284 NLRQKREKINFSDIITTEHMLALSRKD--LNIQLKHYDVTELDEKDEEMFSDEDDIKPEP 341
N + N +D + H++A + NIQLK L E E SDE+ +
Sbjct: 444 NRHISKRSSNSNDTAPSSHIIADKNLEPTSNIQLKKNPDGNLVETSELSDSDENSVLSNK 503
Query: 342 SKYDVVATVPNTAELKSKEGKSE 364
S V NT+ LK S+
Sbjct: 504 SSTLSKKVVENTSPLKYTHSASK 526
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 7.5
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 243 LLDLTGAAIYTSNIVHKALLSAADKCK--KYVEIIKNA-VAKDDNLRQKREKINFSDIIT 299
L D+T + T + +K L + + + EI+K + + D++R+K +I ++
Sbjct: 32 LKDITEEDVGTDDSCNKKFLEVQKQKEDEEDEEILKGVDLTQQDSVREKIHEIQSMSQLS 91
Query: 300 TEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDED 335
+ L +K L Y T E DE S D
Sbjct: 92 EKRKALLMQKMLMSGYLKYRRTHKKESDENQLSSSD 127
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 10.0
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 302 HMLALSRKDLNIQLKHYDVTELDEKDEEMFSD-EDDIKPEPSKYD 345
H L ++ L + ++ + D +EE+F D E+D E K D
Sbjct: 497 HQLVIATTALRSMFTNAEIHDFDGDEEEVFKDVEEDDVSEDQKVD 541
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 10.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 16 KIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIRP 71
K S H L ++ ++ K D+SFG G + + + E VA P + RP
Sbjct: 154 KFCSSVHHL-AKDCDQVNKDDVSFGHVVGVAGTTGADEDVYHEYAKTVAAPTKKRP 208
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 10.0
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 263 SAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTE 322
+A D + + + A D L Q D++ + ++++ ++ Y+
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVNDTLARSEEIDATIQTYNPQN 384
Query: 323 LDEKDEEMFSDEDDIKPEPSKY-DVVATVPNTA 354
+D +DE + + D+ E K D+V+T+ N +
Sbjct: 385 IDLEDEAVEKEWQDLVAEEQKVEDIVSTLGNVS 417
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,655
Number of Sequences: 5004
Number of extensions: 76386
Number of successful extensions: 278
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 28
length of query: 375
length of database: 2,362,478
effective HSP length: 74
effective length of query: 301
effective length of database: 1,992,182
effective search space: 599646782
effective search space used: 599646782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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