Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001131-TA|BGIBMGA001131-PA|IPR001247|Exoribonuclease
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 144 8e-35
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 56 5e-08
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 35 0.093
07_03_1137 - 24220597-24220619,24220694-24221414,24221513-242217... 33 0.28
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 33 0.49
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 32 0.86
12_01_0256 + 1895081-1895575,1896367-1896513,1897435-1897524 30 2.6
04_04_0340 + 24517562-24520318 30 3.5
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 29 4.6
12_01_0468 + 3661177-3661626 29 6.1
03_06_0773 + 36167986-36168148,36168325-36168714,36168790-361689... 29 6.1
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 29 8.0
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 144 bits (350), Expect = 8e-35
Identities = 99/324 (30%), Positives = 165/324 (50%), Gaps = 26/324 (8%)
Query: 40 GSEYGCCIVSLGETKILSEVTCEVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLT 99
G E G V LG+T+++ T ++ QP + RPNEG + + E +PMA P FE R +
Sbjct: 70 GVEDGSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESA 129
Query: 100 VYLVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDG-------------NLT 146
+ L R++++ ++S+ +D+ESLC+V + VWS+R+++ +L++ G NL
Sbjct: 130 IELGRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLI 189
Query: 147 ECASIATLASIAHFRRPDFT---RDGDRVIIHTLTEKDPIPTVLYHYPVCTTFALY-SND 202
+ A+IA LA+++ FRRP+ T DG +V +H +DP+P ++H P+ TFA + +
Sbjct: 190 DAANIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGN 249
Query: 203 ILLTDPNFLEESVCTSNTEEGINT----AGGLLVLGMNQYREVCL-LDLTGAAIYTSNIV 257
I++ DP + EE+V IN+ AGG V M+ CL + AA TS I
Sbjct: 250 IMVIDPTYKEEAVMGGRMTATINSNGDKAGGEGV--MSSVIMQCLRIASVKAADITSKIK 307
Query: 258 HKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKH 317
++ + K + V+ + + K DN K + + T+ S I +
Sbjct: 308 NEVNSYTSAKALQKVKRLPASALKKDNAPDVAMKESSDGALETQSTKP-SSDGQQINKEP 366
Query: 318 YDVTELDEKDEEMFSDEDDIKPEP 341
V E D K E++ + PEP
Sbjct: 367 PSVVE-DNKQEDVEPMLSECNPEP 389
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 56.0 bits (129), Expect = 5e-08
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 13 FIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCEVAQPKQI 69
F+++ + + R D R E R ++ S +G +V LG+T +L+ + EV P
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 70 RPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 129
P+EG I + + P+ +P R ++ + + LE S ++L+ LC++ +
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKAS 149
Query: 130 W 130
W
Sbjct: 150 W 150
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 35.1 bits (77), Expect = 0.093
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 EVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 114
E+ +P + P++G + + V+ +P AAP FE + + L L++C K
Sbjct: 155 ELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGK 207
Score = 32.7 bits (71), Expect = 0.49
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 6 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGC---CIVSLGETKILSEV 59
LS EK+FI+ ++Q R DGR + R + + G +G C+ S+G V
Sbjct: 4 LSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQVFGFISPCVFSIGRA-----V 58
Query: 60 TCEVAQPKQIRPNEGI-IFMNVELNPMAAPQFEANRQTDLTVYLV 103
C A P + G+ + +E++P AA + +A + + +V
Sbjct: 59 ACIEASPTAEYTDAGLQDIVQIEVDPAAAAEIDAKLTVAVQIEVV 103
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 105 LLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIA 158
+ +K IDL SL +V + W L I+ V++ DGNL + + A +++
Sbjct: 317 IFKKTLMKRAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALS 370
>07_03_1137 -
24220597-24220619,24220694-24221414,24221513-24221731,
24221805-24222505,24223127-24223376
Length = 637
Score = 33.5 bits (73), Expect = 0.28
Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 268 CKKYVEIIKNAVAKDDNLRQKRE--KINFSDIITTEHMLALSRKDLNIQLKHYDVTELDE 325
C+ +++ + DNL + ++ F+ ++L L+R D+++ + D
Sbjct: 328 CRVQGDVVLECIHIGDNLDHEEIMFRVMFNTAFIQSNILGLNRDDIDVSWNSNNQFPRDF 387
Query: 326 KDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSD 371
+ E +FSD KP + + V + ++ S + E+ E D
Sbjct: 388 RAEVVFSDPGSFKPAAATVEEVDDDGDETDVASVDTGEEFYEAEED 433
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 32.7 bits (71), Expect = 0.49
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 290 EKINFSDIITTEHMLALSRKDLNIQLKH---YDVTELDEKDEEMFSDEDDIKPEPSKYDV 346
E++N +++I ++++ L+ D N+Q H + LD KD + +DE+ P KYD
Sbjct: 591 EQMNSNELIA-KNLIPLTSVDANMQKSHAGFMTIAHLDFKDS-ILTDEETSVLSPEKYDT 648
Query: 347 VATV 350
++ V
Sbjct: 649 ISPV 652
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 31.9 bits (69), Expect = 0.86
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 15 QKIVSQGHRLDGRNFNETRKL---DISFGSEYGCCIVSLGETKILSEVT 60
++I+ +G R+DGR +E R L ++ +G + S G+T++L VT
Sbjct: 365 KRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVT 413
>12_01_0256 + 1895081-1895575,1896367-1896513,1897435-1897524
Length = 243
Score = 30.3 bits (65), Expect = 2.6
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 256 IVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQL 315
IV LS + +K + + D LR+ + F + + + S ++
Sbjct: 117 IVSMPELSVGEAREKQCGVCLEGFEEGDKLRKMPCEHYFHESCVFKWLQGPSYVPHGVES 176
Query: 316 KHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKS-KEGKSE 364
+ + E+D++ +S ED P+ D +A +P T E K ++G+ E
Sbjct: 177 AYIHINRDIEEDDDAYS-EDGFCAVPASSDAIAALPETTEKKGRRKGRKE 225
>04_04_0340 + 24517562-24520318
Length = 918
Score = 29.9 bits (64), Expect = 3.5
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 259 KALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHY 318
+ LL A K K +VE+ + +++D R +R ++ I+T H L+ ++ Q
Sbjct: 545 RGLLIEAAKSKAFVELSSDGSSRNDFTRTRRACLHAGKILTNFHPDVLTIYNIKQQYVEL 604
Query: 319 DVTELDEKD 327
+ T EK+
Sbjct: 605 NKTWFSEKN 613
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 29.5 bits (63), Expect = 4.6
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 317 HYD-VTELDEKDEEM--FSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDSG 373
HY+ + E + D+ + F D DD +P+ + T N + L K +S+ ++ D+G
Sbjct: 332 HYNLIHENSDSDDRVSSFGDTDDSEPDSLRLSTETTAANKSLLDEKTDRSDGLKQLRDNG 391
>12_01_0468 + 3661177-3661626
Length = 149
Score = 29.1 bits (62), Expect = 6.1
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 292 INFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVP 351
++ DI+ +E LS L+ QL + E +E++EE +E+DI+ E V
Sbjct: 38 LDAQDIVMSEKFACLS---LDEQLHSDEEEEEEEEEEEEVEEEEDIEEEEV---VEEEEE 91
Query: 352 NTAELKSKEGKSEWIEVSSDSGED 375
E + KE + E E ++GE+
Sbjct: 92 EIEEEEVKEEEEELREQVQEAGEE 115
>03_06_0773 +
36167986-36168148,36168325-36168714,36168790-36168965,
36169953-36170071,36170156-36170441
Length = 377
Score = 29.1 bits (62), Expect = 6.1
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 247 TGAAIYTSNIVHKALLSAADKCKKYVE--IIKNAVAKDDNLRQKREKINFSDIITTEHML 304
T AA++T + H A L+ A + +++N +K LR E NF+ IIT + +
Sbjct: 27 TSAAVFTF-LDHPADLARASAVSRSWRRFVVRNGFSKIQCLRLCPEASNFTRIITKQAIA 85
Query: 305 ALSRKDLNIQLKHY 318
+ S D Q + Y
Sbjct: 86 SASESDAEHQHRAY 99
>01_06_1742 -
39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.7 bits (61), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 309 KDLNIQLKHYD--VTELDEKDEEMFSDEDDIKPEPSK 343
++L + YD +TEL K +M+ D DDI E +
Sbjct: 204 EELGVLCSKYDALITELQNKRSDMYKDADDITKESKR 240
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,825,165
Number of Sequences: 37544
Number of extensions: 444261
Number of successful extensions: 1198
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 17
length of query: 375
length of database: 14,793,348
effective HSP length: 83
effective length of query: 292
effective length of database: 11,677,196
effective search space: 3409741232
effective search space used: 3409741232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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