Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001131-TA|BGIBMGA001131-PA|IPR001247|Exoribonuclease
(375 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2) 91 1e-18
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 3e-17
SB_1193| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2) 37 0.023
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.88
SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16) 31 1.2
SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41) 31 1.5
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.0
SB_45114| Best HMM Match : RasGEF (HMM E-Value=3.7e-24) 30 2.7
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) 30 2.7
SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06) 30 3.5
SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 29 4.7
SB_29329| Best HMM Match : Exo_endo_phos (HMM E-Value=2) 29 4.7
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 29 4.7
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_23025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.2
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.2
SB_45995| Best HMM Match : Cna_B (HMM E-Value=4.2) 29 8.2
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0) 29 8.2
>SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)
Length = 267
Score = 91.5 bits (217), Expect = 1e-18
Identities = 39/76 (51%), Positives = 58/76 (76%)
Query: 85 MAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGN 144
MA+P FEA R ++L V L R +E+ Y +S+ ID ESLCIV EKVWS+R++I+VL+H GN
Sbjct: 1 MASPAFEAGRMSELGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQVLDHSGN 60
Query: 145 LTECASIATLASIAHF 160
+ +CA I+ + +++HF
Sbjct: 61 ILDCACISAITALSHF 76
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 86.6 bits (205), Expect = 3e-17
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 3/185 (1%)
Query: 1 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILS 57
M D LS E+ FI Q +R DGR+ + R ++ G + G + L +T IL
Sbjct: 1 MADAQLSVYEREFIISGAEQDYRSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILV 60
Query: 58 EVTCEVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCID 117
V E+ +P + P G + V+ + A+ +F DL L+R L++ Y + ID
Sbjct: 61 GVKAEIGEPNLLTPGCGRVEFFVDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAID 120
Query: 118 LESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTL 177
L SL I+ ++ W L ++ VL GNL + S+A A++ + R P+ T D +
Sbjct: 121 LSSLSIIHGQQCWVLYVDTLVLECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELE 180
Query: 178 TEKDP 182
DP
Sbjct: 181 ISDDP 185
>SB_1193| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)
Length = 304
Score = 37.1 bits (82), Expect = 0.023
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 270 KYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEE 329
KY +++K+ K DN K K+ I ++ + ++ +Q ++ V+ D++ E+
Sbjct: 174 KYKDVLKHRCMKMDNKDNKSYKVTR---IMAHISVSTNSSNITMQSQYNSVSYKDQQQEK 230
Query: 330 MFSDEDDIKP---EPSKYDVVATVPNTAELKSKEGKSE 364
M EDD K E S+ +++A N E + ++ +SE
Sbjct: 231 MGDSEDDDKDSEFEDSEDEILAVFGNETEDEDEDEESE 268
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 31.9 bits (69), Expect = 0.88
Identities = 23/107 (21%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 258 HKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLK- 316
H +LS + + + K +++ + ++K +++ D+ T LA + N +L
Sbjct: 2379 HNTVLSRCESLQNDLVKAKESISSLEQEQEKTQRVK-DDMETRLLELANANSSFNDELMV 2437
Query: 317 -HYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGK 362
D+ EL+++ +E +E++++ + SK + + NTA +S+ K
Sbjct: 2438 ARRDLGELEDRYKEAVQEEEELRQKLSKSSMENSKLNTAYEQSQRRK 2484
>SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)
Length = 467
Score = 31.5 bits (68), Expect = 1.2
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 301 EHMLALSRKDLNIQLKHYDVTEL-----DEKDEEMFSDEDDIKPEPSKY----DVVATVP 351
E + A+ + + N +LK + T+ E D++ F D DD++ EPSK +
Sbjct: 116 EDLRAILQSEANKELKRWKKTQQKPVSDSEDDDDEFDDGDDMEDEPSKMLFGDSSDEEID 175
Query: 352 NTAELKSK---EGKSEWIEVSSDSGE 374
+A+ KSK + +EW+++ +D G+
Sbjct: 176 FSAKSKSKPFSDDNAEWLKL-ADGGD 200
>SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)
Length = 376
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 17 IVSQGHRLDGRNFNETRKL--DISF-GSEYGCCIVSLGETKILSEVT 60
I+ +G RLDGR E R + ++ + S +G I + GET+ L+ VT
Sbjct: 190 ILEKGTRLDGRKTTEIRPIWCEVDYLPSTHGSAIFTRGETQALATVT 236
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 31.1 bits (67), Expect = 1.5
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDE-EMFSDEDDIKPEPSK 343
L +KREK+ + +H++ L + LNI L+ + ++ KD E+FSD D
Sbjct: 579 LIRKREKLKREHVKVKQHVVDLKLQPLNIVLRK-TLDQVQTKDPGEIFSDPVDTNEVLDY 637
Query: 344 YDVVATVPNTAELKSK 359
DV+ + + ++S+
Sbjct: 638 LDVIKQPMDFSTMRSR 653
>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1755
Score = 30.7 bits (66), Expect = 2.0
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 261 LLSAADKCKKYVEIIKNAV-AKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYD 319
L A + K+ E ++ + A DD +Q R+ DI+ + L+ + LKH+
Sbjct: 164 LRGLAPQALKHAENARDTLLAADDMRQQYRQHYTREDIVPVLQLTYLTMGQAHAALKHFQ 223
Query: 320 VTELDEKDEEMFSDE 334
E + K E+ S E
Sbjct: 224 KAEQNLKKAELVSQE 238
>SB_45114| Best HMM Match : RasGEF (HMM E-Value=3.7e-24)
Length = 315
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 140 NHDG--NLTECASIA-TLASIAHFRRPDFTRDGDRVIIHTLTEKD 181
N DG N ++ IA + I H+++ + GDR +IH LT K+
Sbjct: 238 NEDGLVNFSKMRMIAQVIQEIRHYQQTPYAIQGDRKVIHYLTAKE 282
>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1885
Score = 30.3 bits (65), Expect = 2.7
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 286 RQKREKINFSDIITTEHMLALSRK--DLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSK 343
RQ+ E + D +T+ + A R L QL+ LD+ DEE+F E DI+ +
Sbjct: 1569 RQRAENAQYQDAHSTQALQAGLRTLHGLGPQLRRAISGHLDDDDEELFLKE-DIQQKSQG 1627
Query: 344 YDVVAT 349
+D+ T
Sbjct: 1628 FDIFDT 1633
>SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)
Length = 841
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 56 LSEVTCEVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEK 108
LS + ++ PK + NE +I M V + + A + R+T L L++L+ +
Sbjct: 523 LSSIIEVISSPKNVVQNEALIAMTVMASTVKAEFYPKLRETGLMHQLIKLIRE 575
>SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 29.5 bits (63), Expect = 4.7
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 51 GETKILSEVTCEVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCY 110
GET + E EVA +++ E I F+ EL + + A R+ L R++
Sbjct: 423 GETMVELEAKDEVASEREMEREEKIAFLQAELKKLVEREDIAEREVQ---KLQRII---- 475
Query: 111 KDSKCIDLESL 121
D +CI++E +
Sbjct: 476 -DEECIEMEQI 485
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 117 DLESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFR 161
DLE VVE+K S + +KVLN +G+ + T AS+ +
Sbjct: 778 DLEEQYRVVEDKYLSAQKELKVLNEEGDNKAFEQLQTEASVIQMK 822
>SB_29329| Best HMM Match : Exo_endo_phos (HMM E-Value=2)
Length = 197
Score = 29.5 bits (63), Expect = 4.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 294 FSDIITTEHMLALSRKDLNIQLKHYDVT 321
F DII+T+H L DLNI K+ D T
Sbjct: 157 FDDIISTDHKLISFELDLNISKKNKDQT 184
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 29.5 bits (63), Expect = 4.7
Identities = 21/106 (19%), Positives = 48/106 (45%)
Query: 259 KALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHY 318
K + + D+ + +++ ++ +++RQK EKI+ + I E L+ + ++
Sbjct: 277 KRIQTLEDRISELEQLLASSQELLEDIRQKDEKISTLNRIVLEREEKLAELEHGVEELEC 336
Query: 319 DVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSE 364
V E + + + +D +K + D + V + E SK K +
Sbjct: 337 AVEESQKLHQAIQQKDDKLKTLEDRLDELEDVCSENEKLSKNNKQK 382
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 29.1 bits (62), Expect = 6.2
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 248 GAAIYTSNIV----HKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDI---ITT 300
G A + +NI HK + C++ V + + N+R+ +EK+ FS+I +
Sbjct: 868 GTAAWCTNIGNENGHKKRAILEELCEEKVNALSEIKLQQQNIRRLKEKVIFSEIYSELEL 927
Query: 301 EHMLALSRKDLNIQ 314
+ L R DL ++
Sbjct: 928 PPVACLCRNDLQVE 941
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 29.1 bits (62), Expect = 6.2
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 316 KHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDSGED 375
K D E +E+DE+ +E++ K E +K D T AE +SKE + E E +S E+
Sbjct: 1066 KKKDEKEKEEEDED--EEEEEEKKEDAKTDDSET--KEAEPESKEAEPESKEAEPESKEE 1121
>SB_23025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.7 bits (61), Expect = 8.2
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 286 RQKREKINFSDI-ITTEHMLALSRKDLNIQLKHYDVT 321
R R K ++DI IT++H +A SR NIQ +H VT
Sbjct: 44 RHDRVK-TYNDITITSQHTMATSRSRQNIQRRHDHVT 79
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 14 IQKIVSQGHRLDGRNFNETRKLDISFGSE 42
+ IV+ G +DG +F+ LDI+FG +
Sbjct: 443 VSVIVTNGEAMDGTDFDSPAPLDITFGPD 471
>SB_45995| Best HMM Match : Cna_B (HMM E-Value=4.2)
Length = 171
Score = 28.7 bits (61), Expect = 8.2
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 317 HYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSK-EGKSEWIEVSS 370
+YD +L D+++F D+DD+ E E+KSK +G + +V+S
Sbjct: 51 YYDDNDLSYDDDDLFCDDDDVSQEEVSGCAPIHESALKEVKSKSDGGTPLCQVNS 105
>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 1958
Score = 28.7 bits (61), Expect = 8.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 14 IQKIVSQGHRLDGRNFNETRKLDISFGSE 42
+ IV+ G +DG +F+ LDI+FG +
Sbjct: 1770 VSVIVTNGEAMDGTDFDSPAPLDITFGPD 1798
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,978,717
Number of Sequences: 59808
Number of extensions: 549470
Number of successful extensions: 1570
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 33
length of query: 375
length of database: 16,821,457
effective HSP length: 83
effective length of query: 292
effective length of database: 11,857,393
effective search space: 3462358756
effective search space used: 3462358756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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