Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001131-TA|BGIBMGA001131-PA|IPR001247|Exoribonuclease
(375 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderm... 291 4e-78
AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderm... 291 4e-78
U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen pro... 196 1e-49
M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein. 196 1e-49
AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein. 196 1e-49
BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8 pro... 100 1e-20
AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein. 99 1e-20
AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein... 99 1e-20
BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7 pro... 90 1e-17
D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein. 89 3e-17
BC067860-1|AAH67860.1| 624|Homo sapiens SNAG1 protein protein. 33 2.2
BC060791-1|AAH60791.1| 624|Homo sapiens SNAG1 protein protein. 33 2.2
BC020107-1|AAH20107.1| 1156|Homo sapiens nucleoporin 133kDa prot... 33 2.2
AL160004-2|CAI19048.1| 1156|Homo sapiens nucleoporin 133kDa prot... 33 2.2
AL160004-1|CAI19047.1| 1068|Homo sapiens nucleoporin 133kDa prot... 33 2.2
AL139252-2|CAI22354.1| 1156|Homo sapiens nucleoporin 133kDa prot... 33 2.2
AL139252-1|CAI22353.1| 1068|Homo sapiens nucleoporin 133kDa prot... 33 2.2
AL121990-3|CAI22011.1| 1156|Homo sapiens nucleoporin 133kDa prot... 33 2.2
AL121990-2|CAI22010.1| 1068|Homo sapiens nucleoporin 133kDa prot... 33 2.2
AK022572-1|BAB14106.1| 588|Homo sapiens protein ( Homo sapiens ... 33 2.2
AK001754-1|BAA91885.1| 775|Homo sapiens protein ( Homo sapiens ... 33 2.2
AK001676-1|BAA91829.1| 1156|Homo sapiens protein ( Homo sapiens ... 33 2.2
BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium p... 31 5.0
AF181990-1|AAF00492.1| 260|Homo sapiens neurofilament-3 (150 kD... 31 5.0
BC130453-1|AAI30454.1| 1726|Homo sapiens ANKRD26 protein protein. 31 6.6
AL162272-4|CAC19649.1| 1710|Homo sapiens novel protein protein. 31 6.6
AB028997-1|BAA83026.2| 1715|Homo sapiens KIAA1074 protein protein. 31 6.6
BC047413-1|AAH47413.1| 384|Homo sapiens ANKAR protein protein. 31 8.8
>AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 456
Score = 291 bits (713), Expect = 4e-78
Identities = 145/376 (38%), Positives = 226/376 (60%), Gaps = 20/376 (5%)
Query: 1 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVT 60
M++T LSNCE+ F+ + + + RLDGR + R + ISFG++YGCCIV LG+T++L +V+
Sbjct: 1 MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVS 60
Query: 61 CEVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLES 120
CE+ PK R EGI+F N+EL+ MAAP FE RQ+DL V L RL+E+C ++SKCID ES
Sbjct: 61 CELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTES 120
Query: 121 LCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEK 180
LC+V EKVW +R+++ +LNHDGN+ + ASIA + ++ HFRRPD + GD V ++T E+
Sbjct: 121 LCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEER 180
Query: 181 DPIPTVLYHYPVCTTFALY-SNDILLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYR 239
DP+P ++H P+C +FA + LL DPN EE V GLLV+ MN++R
Sbjct: 181 DPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERV-----------MDGLLVIAMNKHR 229
Query: 240 EVCLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIIT 299
E+C + +G + + V + A K + E+I A+ D +R++ K F++ I
Sbjct: 230 EICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIA 289
Query: 300 TEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSK 359
+ + A + I D ++++EK EE+ ++ + P V P TA++ +
Sbjct: 290 NQRITAFKMEKAPI-----DTSDVEEKAEEIIAEAE--PPSEVVSTPVLWTPGTAQI-GE 341
Query: 360 EGKSEWIEVSSDSGED 375
++ W ++ ED
Sbjct: 342 GVENSWGDLEDSEKED 357
>AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 439
Score = 291 bits (713), Expect = 4e-78
Identities = 145/376 (38%), Positives = 226/376 (60%), Gaps = 20/376 (5%)
Query: 1 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVT 60
M++T LSNCE+ F+ + + + RLDGR + R + ISFG++YGCCIV LG+T++L +V+
Sbjct: 1 MKETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVS 60
Query: 61 CEVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLES 120
CE+ PK R EGI+F N+EL+ MAAP FE RQ+DL V L RL+E+C ++SKCID ES
Sbjct: 61 CELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTES 120
Query: 121 LCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEK 180
LC+V EKVW +R+++ +LNHDGN+ + ASIA + ++ HFRRPD + GD V ++T E+
Sbjct: 121 LCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEER 180
Query: 181 DPIPTVLYHYPVCTTFALY-SNDILLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYR 239
DP+P ++H P+C +FA + LL DPN EE V GLLV+ MN++R
Sbjct: 181 DPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERV-----------MDGLLVIAMNKHR 229
Query: 240 EVCLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIIT 299
E+C + +G + + V + A K + E+I A+ D +R++ K F++ I
Sbjct: 230 EICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRKEGGKFGFAESIA 289
Query: 300 TEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSK 359
+ + A + I D ++++EK EE+ ++ + P V P TA++ +
Sbjct: 290 NQRITAFKMEKAPI-----DTSDVEEKAEEIIAEAE--PPSEVVSTPVLWTPGTAQI-GE 341
Query: 360 EGKSEWIEVSSDSGED 375
++ W ++ ED
Sbjct: 342 GVENSWGDLEDSEKED 357
>U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen
protein.
Length = 372
Score = 196 bits (477), Expect = 1e-49
Identities = 104/292 (35%), Positives = 165/292 (56%), Gaps = 20/292 (6%)
Query: 85 MAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGN 144
MAAP FE RQ+DL V L RL+E+C ++SKCID ESLC+V EKVW +R+++ +LNHDGN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 145 LTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDPIPTVLYHYPVCTTFALY-SNDI 203
+ + ASIA + ++ HFRRPD + GD V ++T E+DP+P ++H P+C +FA +
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTY 120
Query: 204 LLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYREVCLLDLTGAAIYTSNIVHKALLS 263
LL DPN EE V GLLV+ MN++RE+C + +G + + V +
Sbjct: 121 LLVDPNEREERV-----------MDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKI 169
Query: 264 AADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTEL 323
A K + E+I A+ D +R++ K F++ I + + A + I D +++
Sbjct: 170 AGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEKAPI-----DTSDV 224
Query: 324 DEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDSGED 375
+EK EE+ ++ + P V P TA++ + ++ W ++ ED
Sbjct: 225 EEKAEEIIAEAE--PPSEVVSTPVLWTPGTAQI-GEGVENSWGDLEDSEKED 273
>M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein.
Length = 355
Score = 196 bits (477), Expect = 1e-49
Identities = 104/292 (35%), Positives = 165/292 (56%), Gaps = 20/292 (6%)
Query: 85 MAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGN 144
MAAP FE RQ+DL V L RL+E+C ++SKCID ESLC+V EKVW +R+++ +LNHDGN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 145 LTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDPIPTVLYHYPVCTTFALY-SNDI 203
+ + ASIA + ++ HFRRPD + GD V ++T E+DP+P ++H P+C +FA +
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTY 120
Query: 204 LLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYREVCLLDLTGAAIYTSNIVHKALLS 263
LL DPN EE V GLLV+ MN++RE+C + +G + + V +
Sbjct: 121 LLVDPNEREERV-----------MDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKI 169
Query: 264 AADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTEL 323
A K + E+I A+ D +R++ K F++ I + + A + I D +++
Sbjct: 170 AGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEKAPI-----DTSDV 224
Query: 324 DEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDSGED 375
+EK EE+ ++ + P V P TA++ + ++ W ++ ED
Sbjct: 225 EEKAEEIIAEAE--PPSEVVSTPVLWTPGTAQI-GEGVENSWGDLEDSEKED 273
>AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein.
Length = 355
Score = 196 bits (477), Expect = 1e-49
Identities = 104/292 (35%), Positives = 165/292 (56%), Gaps = 20/292 (6%)
Query: 85 MAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGN 144
MAAP FE RQ+DL V L RL+E+C ++SKCID ESLC+V EKVW +R+++ +LNHDGN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 145 LTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDPIPTVLYHYPVCTTFALY-SNDI 203
+ + ASIA + ++ HFRRPD + GD V ++T E+DP+P ++H P+C +FA +
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTY 120
Query: 204 LLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYREVCLLDLTGAAIYTSNIVHKALLS 263
LL DPN EE V GLLV+ MN++RE+C + +G + + V +
Sbjct: 121 LLVDPNEREERV-----------MDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKI 169
Query: 264 AADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTEL 323
A K + E+I A+ D +R++ K F++ I + + A + I D +++
Sbjct: 170 AGVKVAEITELILKALENDQKVRKEGGKFGFAESIANQRITAFKMEKAPI-----DTSDV 224
Query: 324 DEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDSGED 375
+EK EE+ ++ + P V P TA++ + ++ W ++ ED
Sbjct: 225 EEKAEEIIAEAE--PPSEVVSTPVLWTPGTAQI-GEGVENSWGDLEDSEKED 273
>BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8
protein.
Length = 276
Score = 100 bits (239), Expect = 1e-20
Identities = 64/270 (23%), Positives = 127/270 (47%), Gaps = 15/270 (5%)
Query: 13 FIQKIVSQGHRLDGRNFNETRKLDISFGS---EYGCCIVSLGETKILSEVTCEVAQPKQI 69
+ ++ + + R DGR E R ++ GS G +V LG T ++ V E A P
Sbjct: 13 YYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTD 72
Query: 70 RPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 129
P++G + NV+L P+ + +F + + + + ++S+ I E LCI + V
Sbjct: 73 APDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLV 132
Query: 130 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDPIPTVLYH 189
W L ++ L++DGN+ + + A LA++ + + P+ T + + + +K + H
Sbjct: 133 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTH 192
Query: 190 YPVCTTFALYSNDILLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYREVCLLDLTGA 249
PV T+FA++ + +L+ DP EE + T G L + M++ ++C L G
Sbjct: 193 -PVATSFAVFDDTLLIVDPTGEEEHLAT-----------GTLTIVMDEEGKLCCLHKPGG 240
Query: 250 AIYTSNIVHKALLSAADKCKKYVEIIKNAV 279
+ T + + A + K+ +++ +
Sbjct: 241 SGLTGAKLQDCMSRAVTRHKEVKKLMDEVI 270
>AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein.
Length = 275
Score = 99 bits (238), Expect = 1e-20
Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 4/224 (1%)
Query: 13 FIQKIVSQGHRLDGRNFNETRKLDISFGS---EYGCCIVSLGETKILSEVTCEVAQPKQI 69
+ ++ + + R DGR E R ++ GS G +V LG T ++ V E A P
Sbjct: 13 YYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTD 72
Query: 70 RPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 129
P++G + NV+L P+ + +F + + + + ++S+ I E LCI + V
Sbjct: 73 APDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLV 132
Query: 130 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDPIPTVLYH 189
W L ++ L++DGN+ + + A LA++ + + P+ T + + + +K + H
Sbjct: 133 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTH 192
Query: 190 YPVCTTFALYSNDILLTDPNFLEESVCTSNTEEGINTAGGLLVL 233
PV T+FA++ + +L+ DP EE + T ++ G L L
Sbjct: 193 -PVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCL 235
>AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein
OIP2 protein.
Length = 265
Score = 99 bits (238), Expect = 1e-20
Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 4/224 (1%)
Query: 13 FIQKIVSQGHRLDGRNFNETRKLDISFGS---EYGCCIVSLGETKILSEVTCEVAQPKQI 69
+ ++ + + R DGR E R ++ GS G +V LG T ++ V E A P
Sbjct: 11 YYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTD 70
Query: 70 RPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 129
P++G + NV+L P+ + +F + + + + ++S+ I E LCI + V
Sbjct: 71 APDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLV 130
Query: 130 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEKDPIPTVLYH 189
W L ++ L++DGN+ + + A LA++ + + P+ T + + + +K + H
Sbjct: 131 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTH 190
Query: 190 YPVCTTFALYSNDILLTDPNFLEESVCTSNTEEGINTAGGLLVL 233
PV T+FA++ + +L+ DP EE + T ++ G L L
Sbjct: 191 -PVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCL 233
>BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7
protein.
Length = 291
Score = 89.8 bits (213), Expect = 1e-17
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 3/166 (1%)
Query: 1 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILS 57
M LS EK +I V + R+DGR + R +++ + G V LG T IL
Sbjct: 1 MASVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILV 60
Query: 58 EVTCEVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCID 117
V E+ PK +PNEG + V+ + A P+FE DL + L + + + +D
Sbjct: 61 GVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVD 120
Query: 118 LESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRP 163
L++LCI E W L +++ +L GNL + SIA A++ + R P
Sbjct: 121 LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP 166
>D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein.
Length = 290
Score = 88.6 bits (210), Expect = 3e-17
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 6 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCE 62
LS EK +I V + R+DGR + R +++ + G V LG T IL V E
Sbjct: 5 LSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE 64
Query: 63 VAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLC 122
+ PK +PNEG + V+ + A P+FE DL + L + + + +DL++LC
Sbjct: 65 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLC 124
Query: 123 IVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRP 163
I E W L +++ +L GNL + SIA A++ + R P
Sbjct: 125 ISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIP 165
>BC067860-1|AAH67860.1| 624|Homo sapiens SNAG1 protein protein.
Length = 624
Score = 32.7 bits (71), Expect = 2.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 257 VHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLK 316
V K L+ + +++VE K V K D ++ + I+F+ + H + +D Q++
Sbjct: 538 VQKGALTKVKESRRHVEEGKMEVQKADGIQDRCNTISFATLAEIHHFHQIRVRDFKSQMQ 597
Query: 317 HY 318
H+
Sbjct: 598 HF 599
>BC060791-1|AAH60791.1| 624|Homo sapiens SNAG1 protein protein.
Length = 624
Score = 32.7 bits (71), Expect = 2.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 257 VHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLK 316
V K L+ + +++VE K V K D ++ + I+F+ + H + +D Q++
Sbjct: 538 VQKGALTKVKESRRHVEEGKMEVQKADGIQDRCNTISFATLAEIHHFHQIRVRDFKSQMQ 597
Query: 317 HY 318
H+
Sbjct: 598 HF 599
>BC020107-1|AAH20107.1| 1156|Homo sapiens nucleoporin 133kDa protein.
Length = 1156
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 1013 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 1071
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 1072 EILCKALQRDNWSSSDGKDDPIEVSKDS 1099
>AL160004-2|CAI19048.1| 1156|Homo sapiens nucleoporin 133kDa protein.
Length = 1156
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 1013 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 1071
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 1072 EILCKALQRDNWSSSDGKDDPIEVSKDS 1099
>AL160004-1|CAI19047.1| 1068|Homo sapiens nucleoporin 133kDa protein.
Length = 1068
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 942 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 1000
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 1001 EILCKALQRDNWSSSDGKDDPIEVSKDS 1028
>AL139252-2|CAI22354.1| 1156|Homo sapiens nucleoporin 133kDa protein.
Length = 1156
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 1013 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 1071
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 1072 EILCKALQRDNWSSSDGKDDPIEVSKDS 1099
>AL139252-1|CAI22353.1| 1068|Homo sapiens nucleoporin 133kDa protein.
Length = 1068
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 942 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 1000
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 1001 EILCKALQRDNWSSSDGKDDPIEVSKDS 1028
>AL121990-3|CAI22011.1| 1156|Homo sapiens nucleoporin 133kDa protein.
Length = 1156
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 1013 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 1071
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 1072 EILCKALQRDNWSSSDGKDDPIEVSKDS 1099
>AL121990-2|CAI22010.1| 1068|Homo sapiens nucleoporin 133kDa protein.
Length = 1068
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 942 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 1000
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 1001 EILCKALQRDNWSSSDGKDDPIEVSKDS 1028
>AK022572-1|BAB14106.1| 588|Homo sapiens protein ( Homo sapiens
cDNA FLJ12510 fis, clone NT2RM2001723. ).
Length = 588
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 445 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 503
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 504 EILCKALQRDNWSSSDGKDDPIEVSKDS 531
>AK001754-1|BAA91885.1| 775|Homo sapiens protein ( Homo sapiens
cDNA FLJ10892 fis, clone NT2RP4002298. ).
Length = 775
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 632 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 690
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 691 EILCKALQRDNWSSSDGKDDPIEVSKDS 718
>AK001676-1|BAA91829.1| 1156|Homo sapiens protein ( Homo sapiens cDNA
FLJ10814 fis, clone NT2RP4000984. ).
Length = 1156
Score = 32.7 bits (71), Expect = 2.2
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
L +K+ ++ ++T ++ L + N + YD + + E +E+DI K
Sbjct: 1013 LAEKQLNLSAMPVLTAPQLIGLYICEENRRANEYDFKKALDL-LEYIDEEEDININDLKL 1071
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDS 372
+++ S +GK + IEVS DS
Sbjct: 1072 EILCKALQRDNWSSSDGKDDPIEVSKDS 1099
>BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium
polypeptide 150kDa protein.
Length = 916
Score = 31.5 bits (68), Expect = 5.0
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 301 EHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKE 360
E L ++L + +K +EK+EE ++E+++ + K V AT P E+K +E
Sbjct: 470 EEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAK--KSPVKATAP---EVKEEE 524
Query: 361 GKSEWIEVSSDSGED 375
G+ E E + E+
Sbjct: 525 GEKEEEEGQEEEEEE 539
>AF181990-1|AAF00492.1| 260|Homo sapiens neurofilament-3 (150 kD
medium) protein.
Length = 260
Score = 31.5 bits (68), Expect = 5.0
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 301 EHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKE 360
E L ++L + +K +EK+EE ++E+++ + K V AT P E+K +E
Sbjct: 33 EEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAK--KSPVKATAP---EVKEEE 87
Query: 361 GKSEWIEVSSDSGED 375
G+ E E + E+
Sbjct: 88 GEKEEEEGQEEEEEE 102
>BC130453-1|AAI30454.1| 1726|Homo sapiens ANKRD26 protein protein.
Length = 1726
Score = 31.1 bits (67), Expect = 6.6
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 232 VLGMNQYREVCLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREK 291
V+ + + E +++L Y I +A A+K K+ ++ A +NL Q RE
Sbjct: 1474 VINLRSHIERNMVELGQVKQYKQEIEERARQEIAEKLKEVNLFLQAQAASQENLEQFREN 1533
Query: 292 INFSDIITTEHMLALSRKDLNIQL-------KHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
NF+ + + + L KDL +L + ++ TEL EK ++++ +E ++ S
Sbjct: 1534 -NFASM---KSQMELRIKDLESELSKIKTSQEDFNKTEL-EKYKQLYLEELKVRKSLSS- 1587
Query: 345 DVVATVPNTAELKSK 359
+ T AE+ +K
Sbjct: 1588 KLTKTNERLAEVNTK 1602
>AL162272-4|CAC19649.1| 1710|Homo sapiens novel protein protein.
Length = 1710
Score = 31.1 bits (67), Expect = 6.6
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 232 VLGMNQYREVCLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREK 291
V+ + + E +++L Y I +A A+K K+ ++ A +NL Q RE
Sbjct: 1458 VINLRSHIERNMVELGQVKQYKQEIEERARQEIAEKLKEVNLFLQAQAASQENLEQFREN 1517
Query: 292 INFSDIITTEHMLALSRKDLNIQL-------KHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
NF+ + + + L KDL +L + ++ TEL EK ++++ +E ++ S
Sbjct: 1518 -NFASM---KSQMELRIKDLESELSKIKTSQEDFNKTEL-EKYKQLYLEELKVRKSLSS- 1571
Query: 345 DVVATVPNTAELKSK 359
+ T AE+ +K
Sbjct: 1572 KLTKTNERLAEVNTK 1586
>AB028997-1|BAA83026.2| 1715|Homo sapiens KIAA1074 protein protein.
Length = 1715
Score = 31.1 bits (67), Expect = 6.6
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 232 VLGMNQYREVCLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREK 291
V+ + + E +++L Y I +A A+K K+ ++ A +NL Q RE
Sbjct: 1463 VINLRSHIERNMVELGQVKQYKQEIEERARQEIAEKLKEVNLFLQAQAASQENLEQFREN 1522
Query: 292 INFSDIITTEHMLALSRKDLNIQL-------KHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
NF+ + + + L KDL +L + ++ TEL EK ++++ +E ++ S
Sbjct: 1523 -NFASM---KSQMELRIKDLESELSKIKTSQEDFNKTEL-EKYKQLYLEELKVRKSLSS- 1576
Query: 345 DVVATVPNTAELKSK 359
+ T AE+ +K
Sbjct: 1577 KLTKTNERLAEVNTK 1591
>BC047413-1|AAH47413.1| 384|Homo sapiens ANKAR protein protein.
Length = 384
Score = 30.7 bits (66), Expect = 8.8
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 175 HTLTEKD---PIPTVLYHYPVCTTFALYSNDILLTDPNFLEESVCT----SNTEEGINTA 227
+TL+EK PI ++ VC ALY D L + E+ CT + T ++T
Sbjct: 264 YTLSEKRGWMPIHFAAFYDNVCIIIALYRKDPSLLEAEATAENQCTPLLLAATSGALDTI 323
Query: 228 GGLLVLGMNQYREVCLLDLTGAAIYTSNIVHKALLSAADKCKKYV 272
L +G N +R+ D+ G +NI+H +L+ + KY+
Sbjct: 324 QYLFSIGAN-WRKT---DIKG-----NNIIHLLVLTFHTEVLKYI 359
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,251,095
Number of Sequences: 224733
Number of extensions: 2168516
Number of successful extensions: 6805
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6783
Number of HSP's gapped (non-prelim): 28
length of query: 375
length of database: 73,234,838
effective HSP length: 91
effective length of query: 284
effective length of database: 52,784,135
effective search space: 14990694340
effective search space used: 14990694340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 66 (30.7 bits)
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