Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001131-TA|BGIBMGA001131-PA|IPR001247|Exoribonuclease
(375 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical p... 190 2e-48
Z92838-10|CAB07412.2| 312|Caenorhabditis elegans Hypothetical p... 46 3e-05
Z92832-9|CAB07377.2| 312|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U00033-16|AAM29690.1| 65|Caenorhabditis elegans Hypothetical p... 40 0.002
Z73912-1|CAA98145.1| 465|Caenorhabditis elegans Hypothetical pr... 37 0.027
Z14067-1|CAA78450.1| 465|Caenorhabditis elegans putative integr... 37 0.027
Z14066-1|CAA78449.1| 465|Caenorhabditis elegans putative integr... 37 0.027
U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical pr... 33 0.25
L23651-10|AAM22041.1| 821|Caenorhabditis elegans Kleisin (abnor... 33 0.25
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr... 33 0.43
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical ... 31 1.3
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 30 2.3
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 30 2.3
Z75550-4|CAA99929.1| 167|Caenorhabditis elegans Hypothetical pr... 30 3.1
AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical ... 30 3.1
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 29 4.1
AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical ... 29 4.1
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 29 5.4
Z81147-3|CAB03530.1| 305|Caenorhabditis elegans Hypothetical pr... 29 7.1
Z69663-1|CAA93511.1| 636|Caenorhabditis elegans Hypothetical pr... 29 7.1
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 29 7.1
U55374-7|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 29 7.1
U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 29 7.1
U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 29 7.1
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 29 7.1
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 29 7.1
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 29 7.1
Z77660-2|CAB01176.1| 361|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z75545-6|CAA99888.3| 649|Caenorhabditis elegans Hypothetical pr... 28 9.4
U23450-5|AAK31466.3| 706|Caenorhabditis elegans Hypothetical pr... 28 9.4
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 28 9.4
AL008986-2|CAA15621.3| 649|Caenorhabditis elegans Hypothetical ... 28 9.4
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 28 9.4
>U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical
protein F37C12.13a protein.
Length = 434
Score = 190 bits (462), Expect = 2e-48
Identities = 99/317 (31%), Positives = 180/317 (56%), Gaps = 13/317 (4%)
Query: 1 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVT 60
MR ++NCEK I + + G R D R+ E R + + G+E G I ++G TK+++ V+
Sbjct: 1 MRVQPVTNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTKVMAAVS 60
Query: 61 CEVAQPKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLES 120
E+A+P +RP++G+I ++V+L+PMA E +R + L+RLLE +DS+CID+E+
Sbjct: 61 AEIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEA 120
Query: 121 LCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIHTLTEK 180
LCI +++W +R+++++L+ DG+L +CA +A + ++ HFRRP+ T + +I++ EK
Sbjct: 121 LCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEK 180
Query: 181 DPIPTVLYHYPVCTTFALY-SNDILLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYR 239
P+P +YH P+CTT L I++ DP +E+ C G +V+ N+ R
Sbjct: 181 APVPLNIYHMPICTTIGLLDKGQIVVIDPTD-KETACLD----------GSIVVACNKRR 229
Query: 240 EVCLLDLTGAAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIIT 299
EVC L + I ++ + + + A + + ++ + V K D + + K IT
Sbjct: 230 EVCALHQSTNLILSTKQIERCVKLAMARAEALTAVVSD-VIKQDQIERSAFKRPDGFAIT 288
Query: 300 TEHMLALSRKDLNIQLK 316
T ++ + + Q++
Sbjct: 289 TPSLILTAGTTASRQIR 305
>Z92838-10|CAB07412.2| 312|Caenorhabditis elegans Hypothetical
protein F31D4.1 protein.
Length = 312
Score = 46.4 bits (105), Expect = 3e-05
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 6 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETK-ILSEVTC 61
LS+ EK F+ R DGR+ + R++ + G G C V LG+T +L+ +
Sbjct: 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64
Query: 62 EVAQ---PKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDL 118
E+ + P + I F NV+ + A+ QF + L + Y SK +D+
Sbjct: 65 ELESYDAETEKEPKQPINF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDI 121
Query: 119 E---SLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPD 164
+ + + W + ++I VL DG++++ SIA + +++ P+
Sbjct: 122 MPNLAKTQLADGYRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170
>Z92832-9|CAB07377.2| 312|Caenorhabditis elegans Hypothetical
protein F31D4.1 protein.
Length = 312
Score = 46.4 bits (105), Expect = 3e-05
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 6 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETK-ILSEVTC 61
LS+ EK F+ R DGR+ + R++ + G G C V LG+T +L+ +
Sbjct: 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64
Query: 62 EVAQ---PKQIRPNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDL 118
E+ + P + I F NV+ + A+ QF + L + Y SK +D+
Sbjct: 65 ELESYDAETEKEPKQPINF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDI 121
Query: 119 E---SLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPD 164
+ + + W + ++I VL DG++++ SIA + +++ P+
Sbjct: 122 MPNLAKTQLADGYRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170
>U00033-16|AAM29690.1| 65|Caenorhabditis elegans Hypothetical
protein F37C12.13b protein.
Length = 65
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 1 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETK 54
MR ++NCEK I + + G R D R+ E R + + G+E G I ++G TK
Sbjct: 1 MRVQPVTNCEKAVILEALKIGKRFDFRSLEEFRDVKLVVGAEVGTAICTIGNTK 54
>Z73912-1|CAA98145.1| 465|Caenorhabditis elegans Hypothetical
protein ZK524.1 protein.
Length = 465
Score = 36.7 bits (81), Expect = 0.027
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 269 KKYVEIIKNAVAKDDN----LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELD 324
K+ +E A+DD +RQ+R IN D + TEH + + I+LK + TE
Sbjct: 260 KQTIEYYTKREAQDDEFYQKIRQRRAAIN-PDSVPTEHSPLVEAEPSPIELKEKNSTEEL 318
Query: 325 EKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKE--GKSEWIEVSSDS 372
DE S+ S D TV +T+++ + E + EW ++ S+S
Sbjct: 319 SDDESDTSETSSGSSNLSSSDSSTTV-STSDISTAEECDQKEWDDLVSNS 367
>Z14067-1|CAA78450.1| 465|Caenorhabditis elegans putative integral
membrane protein protein.
Length = 465
Score = 36.7 bits (81), Expect = 0.027
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 269 KKYVEIIKNAVAKDDN----LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELD 324
K+ +E A+DD +RQ+R IN D + TEH + + I+LK + TE
Sbjct: 260 KQTIEYYTKREAQDDEFYQKIRQRRAAIN-PDSVPTEHSPLVEAEPSPIELKEKNSTEEL 318
Query: 325 EKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKE--GKSEWIEVSSDS 372
DE S+ S D TV +T+++ + E + EW ++ S+S
Sbjct: 319 SDDESDTSETSSGSSNLSSSDSSTTV-STSDISTAEECDQKEWDDLVSNS 367
>Z14066-1|CAA78449.1| 465|Caenorhabditis elegans putative integral
membrane protein protein.
Length = 465
Score = 36.7 bits (81), Expect = 0.027
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 269 KKYVEIIKNAVAKDDN----LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELD 324
K+ +E A+DD +RQ+R IN D + TEH + + I+LK + TE
Sbjct: 260 KQTIEYYTKREAQDDEFYQKIRQRRAAIN-PDSVPTEHSPLVEAEPSPIELKEKNSTEEL 318
Query: 325 EKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKE--GKSEWIEVSSDS 372
DE S+ S D TV +T+++ + E + EW ++ S+S
Sbjct: 319 SDDESDTSETSSGSSNLSSSDSSTTV-STSDISTAEECDQKEWDDLVSNS 367
>U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical
protein F41G3.14 protein.
Length = 277
Score = 33.5 bits (73), Expect = 0.25
Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 25/223 (11%)
Query: 11 KNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIR 70
+ + + +G DGR + +KL G E G S+ T+ ++ V+C + +
Sbjct: 12 RGYFATFIKEGVYPDGRGLLDEQKLVFKQG-ECGGVGSSVVSTQGVT-VSCSIQASVSLV 69
Query: 71 PNEGIIFMNVELNPMAAPQFEANRQTDLTVYLVRLLEKCY---KDSKCIDLESLCIVVEE 127
+ ++ + +E + + E + + +V L C+ ++ +C+D+ + +E
Sbjct: 70 SDAPLVDIKIEGSQQLS---EKDAEDCNSVLLSLFTNNCFVRRENLRCLDVCGKPLPLE- 125
Query: 128 KVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFT---RDGDRVIIH-TLTEKD-- 181
W L I +KVL+ +GN + A A A++ + P +GD I T + D
Sbjct: 126 --WQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSIVLNHSEGDESTIEKTQIQADYR 183
Query: 182 PIPTVLYHYP-VCTTFALY-------SNDILLTDPNFLEESVC 216
+ + P +C +F ++ +++LL P SVC
Sbjct: 184 TMHRLTLEEPLMCCSFGIFVDVNSDKKSEVLLLSPTLEAISVC 226
>L23651-10|AAM22041.1| 821|Caenorhabditis elegans Kleisin (abnormal
closure) familyprotein 2 protein.
Length = 821
Score = 33.5 bits (73), Expect = 0.25
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 199 YSNDILLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYREVCLLDLTGAAIYTSNIVH 258
+S D+L +LE V +E+ N + ++ C + A+Y + H
Sbjct: 28 FSIDVLKALAGYLE--VIRQESEDTDNQVDAATTYRLFDFQRACRIIQGSCAVYGRKVDH 85
Query: 259 KALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHY 318
L+ + V++++N D N +R A RK+ N+ +Y
Sbjct: 86 VYELTIS-----VVDLVENKGQDDGNTGSRRG--------------AGRRKNFNLGSTNY 126
Query: 319 DVTELDE-KDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSK-EGKS 363
D+ ++D K E + + E +K E D V V N ++S+ E KS
Sbjct: 127 DLADIDSLKQEALANFEKTVKEEKKSIDAVRMVENAEVIESQYERKS 173
>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
protein C38D9.3 protein.
Length = 1496
Score = 32.7 bits (71), Expect = 0.43
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 295 SDIITTE---HMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVP 351
SD+ +E H A+S + ++ L D T +D +D++ + D + S Y ++VP
Sbjct: 140 SDLFKSELNHHNYAISPSEEDVALTE-DQTNVDVEDDDFEAKNDQLSRASSNYQFTSSVP 198
Query: 352 NTAELKSKE 360
NT + + E
Sbjct: 199 NTNDTANLE 207
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
protein ZK783.1 protein.
Length = 2585
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 107 EKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGNLTECA--SIATLASIAHFRRPD 164
+KC ++C++ +S+C V ++ +L K H EC + ++ +S D
Sbjct: 413 KKCVDINECVENDSVCGGVGDRCVNLFGGFKCCQHGSTEAECTDQAFSSDSSTISSHGAD 472
Query: 165 FTRDGDRVI 173
FT G+++I
Sbjct: 473 FTTTGEQII 481
>AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical
protein F59H5.1 protein.
Length = 758
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 310 DLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIE 367
D + L+ D+ E+D D E DE+++ EPS+ +T ++ + G ++ +
Sbjct: 20 DEDEDLEEIDLDEVDNADFEREDDEEEVLSEPSESPYTSTPKSSKRVNKTRGTKDFFK 77
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 30.3 bits (65), Expect = 2.3
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 273 EIIKNAVAKDDNLRQKREKINFSDIITTEHMLA--LSRKDLNIQLKHYDVTELDEKDEEM 330
E I+ +A+ + +Q++E S +I T++ + D+++ + ++ ++ D+ DE++
Sbjct: 2108 EKIRRGIAEFERTKQEKEAQR-STVIETQYSSKDMFNESDISLDVV-FNTSQKDKSDEKL 2165
Query: 331 FSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSE 364
S E ++PE S V + N L SKE + E
Sbjct: 2166 SSPERTVEPEVSTATV--NLDNMVAL-SKERRKE 2196
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 30.3 bits (65), Expect = 2.3
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 273 EIIKNAVAKDDNLRQKREKINFSDIITTEHMLA--LSRKDLNIQLKHYDVTELDEKDEEM 330
E I+ +A+ + +Q++E S +I T++ + D+++ + ++ ++ D+ DE++
Sbjct: 2108 EKIRRGIAEFERTKQEKEAQR-STVIETQYSSKDMFNESDISLDVV-FNTSQKDKSDEKL 2165
Query: 331 FSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSE 364
S E ++PE S V + N L SKE + E
Sbjct: 2166 SSPERTVEPEVSTATV--NLDNMVAL-SKERRKE 2196
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 30.3 bits (65), Expect = 2.3
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 273 EIIKNAVAKDDNLRQKREKINFSDIITTE-HMLALSRKDLNIQLKHYDVTELDEKDEEMF 331
E K + K++ +K+E+ +D E +KD ++ + VTE+ ++DE+
Sbjct: 174 EEFKKEMKKEEKKEEKKEEPKKNDAPKKEGETKGEVKKDALVE--NPIVTEMSDRDEKKE 231
Query: 332 SDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDSGED 375
+DD K E A E K +E K E E D ++
Sbjct: 232 EKKDDKKDEKKDEKKEAKKEEKKEEKKEEKKEEKKEEKKDDKKE 275
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 30.3 bits (65), Expect = 2.3
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 301 EHMLALSRKDLNIQLKHYDVTELDEKDEE----MFSDEDDIKPEPSKY-DVVATVPNTAE 355
E ML ++ + + YD ++DE D E M DE DI + Y D P
Sbjct: 135 EDMLDMNNEIQEAMSRQYDTPDIDEADLEAELAMLGDELDIGESDTNYLDEALAAPTVPS 194
Query: 356 LKSKEGKSEWIEV 368
K K +E +EV
Sbjct: 195 DKPKTRVAEGLEV 207
>Z75550-4|CAA99929.1| 167|Caenorhabditis elegans Hypothetical
protein T22C1.5 protein.
Length = 167
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 285 LRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKY 344
+ Q R KI+ + +H A+ RK L +L+ D ++ E+ ++++ +PE
Sbjct: 61 MNQSRFKIDDTTTSLCDH--AIERKKLLEKLRRMDEETAEQDAEDEKENDENKEPESPNR 118
Query: 345 DVVATVPNTAELKSKEGKSEWIEVSSDSGED 375
+ T +T K+ + K + I +SSD +
Sbjct: 119 TLRKTKVDTPRPKTAQLKRKRIIMSSDDDSE 149
>AF003390-1|AAB54271.2| 473|Caenorhabditis elegans Hypothetical
protein R155.1a protein.
Length = 473
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 17 IVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQIRPNE 73
IV GH L G F+ET DI++ + + CI++L ++ +V +P+ ++P++
Sbjct: 95 IVFLGHLLIGYWFHETDTYDITWTTPF--CIMTLRFIGLVMDVYDGAQKPEHLKPDQ 149
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
W04A8.7 protein.
Length = 1792
Score = 29.5 bits (63), Expect = 4.1
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 251 IYTSNIVHKALLSAAD-KCKKYVEIIKNAVAKD-DNLRQKREKIN---FSDIITTEHMLA 305
IYT+++V S K K+ E+ + V D L + IN +D + LA
Sbjct: 1650 IYTNSVVFNGAESVYSLKAKEMFEMAEMLVKDQMDTLGELERNINPSAINDAAAAQRGLA 1709
Query: 306 LSRKDLNIQLKHYDVTELDEKDE-EMFSDEDDIKPEPSKYD 345
+ D +++ + E +E D+ E+ D+ DI YD
Sbjct: 1710 MDSDDHMDEMEDHPTEEEEEDDDDEIMDDDMDIDATGYSYD 1750
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 29.5 bits (63), Expect = 4.1
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 251 IYTSNIVHKALLSAAD-KCKKYVEIIKNAVAKD-DNLRQKREKIN---FSDIITTEHMLA 305
IYT+++V S K K+ E+ + V D L + IN +D + LA
Sbjct: 1650 IYTNSVVFNGAESVYSLKAKEMFEMAEMLVKDQMDTLGELERNINPSAINDAAAAQRGLA 1709
Query: 306 LSRKDLNIQLKHYDVTELDEKDE-EMFSDEDDIKPEPSKYD 345
+ D +++ + E +E D+ E+ D+ DI YD
Sbjct: 1710 MDSDDHMDEMEDHPTEEEEEDDDDEIMDDDMDIDATGYSYD 1750
>AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical
protein BE0003N10.1 protein.
Length = 745
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 21 GHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVT 60
G R DGR +E R + I + +GC I G+T+++S VT
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVT 374
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 29.1 bits (62), Expect = 5.4
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 269 KKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELDEKDE 328
+K +I+++A KDD + + ++K+N SR L + T+ D+ +E
Sbjct: 165 EKLEKILEDARKKDDEIEELKKKVNSES----------SRATLADEAVQKLQTDKDKLEE 214
Query: 329 EMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDS 372
E +D D+K + K + ++K+KEG+ E ++ S S
Sbjct: 215 EYMNDMRDLK-KALKDNQEGLEKIAKDVKNKEGEIEELKKSVSS 257
>Z81147-3|CAB03530.1| 305|Caenorhabditis elegans Hypothetical
protein T09E11.3 protein.
Length = 305
Score = 28.7 bits (61), Expect = 7.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 106 LEKCYKDSKCIDLESLCIVVEEKVWS 131
L+KC ++++C D S I + EKV+S
Sbjct: 132 LDKCVRENRCYDCGSNMICIVEKVYS 157
>Z69663-1|CAA93511.1| 636|Caenorhabditis elegans Hypothetical
protein K02B9.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 7.1
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 266 DKCKKYVEIIKNAVAKDDN-LRQKREKINFSDIITTEHMLALSRKD-LNIQLKHYDVTEL 323
+K +Y I K + DN +R EKINFS +T +A S K ++ H E
Sbjct: 544 EKMIRYSGIKKRSTMDMDNFVRMLDEKINFSPEPSTSSDIASSVKGYMSQSFLHQQDDEA 603
Query: 324 DEKDEEMFSDEDDIKPEPSKYD 345
+ + + S+ D + EP + D
Sbjct: 604 PDCTKNVHSESDLKQAEPQESD 625
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 287 QKREKINFSDIITTE-HMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYD 345
+K F D +T + L + NI + H+D + L D E + +D + + D
Sbjct: 63 EKSSTARFVDHLTHDIQQLETEMRSRNIPITHFDPSLLATTDVETGATTEDDANDEERRD 122
Query: 346 VVATVPNTAE 355
+ AT+ + A+
Sbjct: 123 IEATIEDHAQ 132
>U55374-7|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 300 TEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVV-ATVPNTAEL 356
T + AL R+ L+I+++ V E+DE DEE+ I P +K ++V VP EL
Sbjct: 1386 TTTLFALIRESLSIKMR--PVEEMDEADEELRLTLKKIWPLKAKKNMVDLVVPPNHEL 1441
>U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 300 TEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVV-ATVPNTAEL 356
T + AL R+ L+I+++ V E+DE DEE+ I P +K ++V VP EL
Sbjct: 1386 TTTLFALIRESLSIKMR--PVEEMDEADEELRLTLKKIWPLKAKKNMVDLVVPPNHEL 1441
>U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 300 TEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVV-ATVPNTAEL 356
T + AL R+ L+I+++ V E+DE DEE+ I P +K ++V VP EL
Sbjct: 1505 TTTLFALIRESLSIKMR--PVEEMDEADEELRLTLKKIWPLKAKKNMVDLVVPPNHEL 1560
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 287 QKREKINFSDIITTE-HMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYD 345
+K F D +T + L + NI + H+D + L D E + +D + + D
Sbjct: 143 EKSSTARFVDHLTHDIQQLETEMRSRNIPITHFDPSLLATTDVETGATTEDDANDEERRD 202
Query: 346 VVATVPNTAE 355
+ AT+ + A+
Sbjct: 203 IEATIEDHAQ 212
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 28.7 bits (61), Expect = 7.1
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 300 TEHMLALSRKDLNIQLKHYDVTELDEKDEEMFSDEDDIKPEPSKYDVV-ATVPNTAEL 356
T + AL R+ L+I+++ V E+DE DEE+ I P +K ++V VP EL
Sbjct: 1505 TTTLFALIRESLSIKMR--PVEEMDEADEELRLTLKKIWPLKAKKNMVDLVVPPNHEL 1560
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 325 EKDEEMFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSEWIEVSSDSGED 375
E + MF+D DV V + EL K G E IE+SSD +D
Sbjct: 209 EAEMTMFADSQKPVERDEAMDVDEEVEDDEELNDK-GTGEVIEISSDGDDD 258
>Z77660-2|CAB01176.1| 361|Caenorhabditis elegans Hypothetical
protein F38H4.2 protein.
Length = 361
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 292 INFSDIITTEHMLALSRKDLNIQLKHY 318
IN S I T + +AL+ K LNI LKH+
Sbjct: 238 INSSHITLTFNEMALNEKSLNIFLKHW 264
>Z75545-6|CAA99888.3| 649|Caenorhabditis elegans Hypothetical
protein H37N21.1 protein.
Length = 649
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 253 TSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLN 312
T +++ KA+ S D ++ + I+ + KD R ++ F I+ H L L
Sbjct: 267 TEDVIEKAIRSLEDPMQQ--DFIRQCLRKDPAERPSARELLFHQILFEVHSLKLLSAHAI 324
Query: 313 IQLKHY-DVTE 322
+ K Y DV+E
Sbjct: 325 VDSKKYEDVSE 335
>U23450-5|AAK31466.3| 706|Caenorhabditis elegans Hypothetical
protein C30B5.1 protein.
Length = 706
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 327 DEEMFSDEDDIKPEPSKYDVVATVPNTAELK 357
D+E+F DE KP S DV+ T+ + L+
Sbjct: 498 DDEVFEDESRFKPVASMQDVMRTLSTPSTLR 528
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 28.3 bits (60), Expect = 9.4
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 271 YVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLNIQLKHYDVTELD-EKDEE 329
YV++ + + KDD R+ E+ E LAL LN+++K + E+D E + +
Sbjct: 68 YVQVPEE-LEKDDEWREMTEE---------EESLALEENSLNLEIKQAEAMEIDAELERQ 117
Query: 330 MFSDEDDIKPEPSKYDVVATVPNTAELKSKEGKSE 364
+ + D ++ E K N LK +E K E
Sbjct: 118 VEMEADKLEREHRK--------NQKNLKKEEKKQE 144
>AL008986-2|CAA15621.3| 649|Caenorhabditis elegans Hypothetical
protein H37N21.1 protein.
Length = 649
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 253 TSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITTEHMLALSRKDLN 312
T +++ KA+ S D ++ + I+ + KD R ++ F I+ H L L
Sbjct: 267 TEDVIEKAIRSLEDPMQQ--DFIRQCLRKDPAERPSARELLFHQILFEVHSLKLLSAHAI 324
Query: 313 IQLKHY-DVTE 322
+ K Y DV+E
Sbjct: 325 VDSKKYEDVSE 335
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 28.3 bits (60), Expect = 9.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 325 EKDEEMFSDEDDI-----KPEPSKYDVVATVPNTAELKSKEG-KSEWIEVSSDSGED 375
+KD++ F +EDD+ KP S D V V + K K G KS+ + +S +D
Sbjct: 25 KKDKKTFEEEDDVENVKRKPAESSDDEVVVVVVKKDQKGKRGKKSKKPKKKQESSDD 81
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,752,311
Number of Sequences: 27539
Number of extensions: 426297
Number of successful extensions: 1657
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1639
Number of HSP's gapped (non-prelim): 46
length of query: 375
length of database: 12,573,161
effective HSP length: 83
effective length of query: 292
effective length of database: 10,287,424
effective search space: 3003927808
effective search space used: 3003927808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -