GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001131-TA|BGIBMGA001131-PA|IPR001247|Exoribonuclease
         (375 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.46 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   4.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   4.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   4.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   5.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   5.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   5.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   5.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   7.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   9.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.2 bits (55), Expect = 0.46
 Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 182 PIPTVLYHYPVCTTFALYSNDILLTDPNFLEESVCTSNTEEGINTAGGLLVLGMNQYREV 241
           P+   LY+ P+ +    Y +    ++P + E +V    +++ +NT     V+  N    +
Sbjct: 263 PVTNNLYYSPLLSHGLYYVDTEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKNGVLFL 322

Query: 242 CLLDLTG-AAIYTSNIVHKALLSAADKCKKYVEIIKNAVAKDDNLRQKREKINFSDIITT 300
            L+  +G A +    ++ +       + ++ +++I +     +NL Q   +IN  D    
Sbjct: 323 GLVGNSGIACVNEHQVLQRESFDVVAQNEETLQMIVSMKIM-ENLPQS-GRIN--DPEGN 378

Query: 301 EHMLALSRK 309
           E+MLALS +
Sbjct: 379 EYMLALSNR 387


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 283 DNLRQKREKINFS-DIITTEHMLALSRK 309
           D+LR+KR+KIN S + +   H+ A + K
Sbjct: 331 DSLRRKRQKINNSQNALVLRHVQAEAEK 358


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 271 YVEIIKNAVAKDDNLRQKREKINFSDIITTEH 302
           Y  II+   A + N+R++ +K+N + + ++E+
Sbjct: 236 YWFIIQAVAAHEKNMREQAKKMNVASLRSSEN 267


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 187 LYHYPVCTTFALYSNDILLTDPNFLEESVCTSNTEE 222
           LY Y       + SN+ L+ D  F++ES    + EE
Sbjct: 321 LYKYLQLIENVIPSNEELICDKRFVDESANNLSIEE 356


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 187 LYHYPVCTTFALYSNDILLTDPNFLEESVCTSNTEE 222
           LY Y       + SN+ L+ D  F++ES    + EE
Sbjct: 336 LYKYLQLIENVIPSNEELICDKRFVDESANNLSIEE 371


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 271 YVEIIKNAVAKDDNLRQKREKINFSDIITTEH 302
           Y  II+   A + N+R++ +K+N + + ++E+
Sbjct: 112 YWFIIQAVAAHEKNMREQAKKMNVASLRSSEN 143


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 10 EKNFIQKIVSQGHRLDGRNFNETRKLDISFG 40
          EK  + +++S  + L+    NE+  L++ FG
Sbjct: 55 EKRLLNELLSSYNTLERPVANESEPLEVKFG 85


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 10 EKNFIQKIVSQGHRLDGRNFNETRKLDISFG 40
          EK  + +++S  + L+    NE+  L++ FG
Sbjct: 55 EKRLLNELLSSYNTLERPVANESEPLEVKFG 85


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 66  PKQIRPNEGIIFMNVELNPMAAPQFE 91
           PK I+  +  I M V   PM A  F+
Sbjct: 391 PKSIKSGDAAIVMLVPSKPMCAEAFQ 416


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 182 PIPTVLYHYPVCTTFALYSNDILLTDPNFLEESVCTSNTEEGINT 226
           P+   LY+ P+ +    Y N        F E +V    +E+ +NT
Sbjct: 258 PVTNNLYYSPLASHGLYYVNTAPFMKSQFGENNVQYQGSEDILNT 302


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 298 ITTEHMLALSRKDLNIQLKHY 318
           +  EH +A  R+D+ I L H+
Sbjct: 190 LDVEHRVAYWREDIGINLHHW 210


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 217 TSNTEEGINTAGGLLVLGMNQYREVCL 243
           T+N  +G+   GG  +LG+     VCL
Sbjct: 367 TTNGRKGLLKGGGGYLLGIQCLTVVCL 393


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,367
Number of Sequences: 429
Number of extensions: 5073
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 12
length of query: 375
length of database: 140,377
effective HSP length: 59
effective length of query: 316
effective length of database: 115,066
effective search space: 36360856
effective search space used: 36360856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)