Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001130-TA|BGIBMGA001130-PA|IPR002524|Cation efflux
protein
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0707 - 20212190-20214592 100 4e-21
05_01_0214 - 1615519-1616775 73 3e-13
02_05_1345 + 35825552-35825834,35825914-35826022,35826098-358261... 43 3e-04
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 41 0.001
12_01_0778 + 7111562-7112152,7113034-7113157,7113252-7113395,711... 34 0.20
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 2.4
03_06_0394 + 33592780-33593310,33593890-33594013,33594233-335943... 29 4.3
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 29 5.6
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 29 7.4
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 28 9.8
01_06_0171 - 27190072-27190645,27190800-27190955,27191932-27192359 28 9.8
01_01_0764 + 5910687-5910961,5912549-5912636,5912750-5912909,591... 28 9.8
>08_02_0707 - 20212190-20214592
Length = 800
Score = 99.5 bits (237), Expect = 4e-21
Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 174 TQNHKSCKSSSDPGHMNMKGVFLHVLSDALGSLIVVGSALVVWLTEWKYKHYI--DPXXX 231
++NH ++ H NM+G+FLHVL+D +GS+ VV S L++ KYK ++ DP
Sbjct: 642 SENHNKSRNRHHIDH-NMEGIFLHVLADTMGSVGVVISTLLI-----KYKGWLIADPICS 695
Query: 232 XXXXXXXXXXXWPLLRESSLILLQTVPTHIQVDAIQRRLKNV---EGVMAVHEFHVWQLA 288
PLLR S+ ILLQ VP ++ D I+ L +V +GV+ VH FHVW L
Sbjct: 696 VFISIMIVSSVLPLLRNSAEILLQRVPRSLEKD-IKEALDDVMKIKGVIGVHNFHVWNLT 754
Query: 289 GDRIIASAHIRCRNLSEYMKIAEKVKEFFHNEGIHSTTIQPEFVE 333
I+ + H+ ++ I EK + FH GI TIQ E V+
Sbjct: 755 NTDIVGTFHLHITTEADKSSIREKASDIFHEAGIQDLTIQIECVK 799
Score = 60.1 bits (139), Expect = 3e-09
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 7 KKCRLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLS--VKMSPKK 64
K ++ L + + FVE G++++S+ L++D+ HML D AAL I + + P
Sbjct: 359 KSRKIAAFLLINTAYMFVEFTSGFMSDSLGLISDACHMLFDCAALAIGLYASYIARLPAN 418
Query: 65 WSKNTFGWARAEVLGALVNAVFLVALCFSITVEAVKRFIE 104
N +G R EVL VNAVFLV + I +E+ +R +E
Sbjct: 419 GLYN-YGRGRFEVLSGYVNAVFLVLVGALIVLESFERILE 457
>05_01_0214 - 1615519-1616775
Length = 418
Score = 72.9 bits (171), Expect = 3e-13
Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 6/187 (3%)
Query: 147 VNSNADRALGHNSTDNEETDEMVKKAKTQNHKSCKSSSDPG-HMNMKGVFLHVLSDALGS 205
VN + GH+ D EE K + ++N+ +LHVL D++ S
Sbjct: 233 VNLHHHPGTGHHHHDAEEPLLKSDAGCDSTQSGAKDAKKARRNINVHSAYLHVLGDSIQS 292
Query: 206 L-IVVGSALVVWLTEWKYKHYIDPXXXXXXXXXXXXXXWPLLRESSLILLQTVPTHIQVD 264
+ +++G A++ + EWK ID +LR +L+++ P I
Sbjct: 293 IGVMIGGAIIWYKPEWKI---IDLICTLIFSVIVLFTTIKMLRNILEVLMESTPREIDAT 349
Query: 265 AIQRRLKNVEGVMAVHEFHVWQLAGDRIIASAHIRCRNLSEYMKIAEKVKEFFHNE-GIH 323
+++ L++++GV+AVHE H+W + +++ + H+ ++ ++ +KV + +E I
Sbjct: 350 SLENGLRDMDGVVAVHELHIWAITVGKVLLACHVTITQDADADQMLDKVIGYIKSEYNIS 409
Query: 324 STTIQPE 330
TIQ E
Sbjct: 410 HVTIQIE 416
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 5 SGKKCRLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSP-K 63
S +K + +LC+ F VE++ G NS+A++ D+ H+LSDVAA I+ S+ + +
Sbjct: 54 SMRKLIIAVILCII--FMAVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWE 111
Query: 64 KWSKNTFGWARAEVLGALVNAVFLVALCFSITVEAVKRFI 103
+ ++G+ R E+LGALV+ + L + EA+ R I
Sbjct: 112 ATPQQSYGFFRIEILGALVSIQLIWLLAGILVYEAIVRLI 151
>02_05_1345 +
35825552-35825834,35825914-35826022,35826098-35826137,
35827481-35827522,35827605-35827694,35828400-35828470,
35829375-35829463,35829583-35829652,35829898-35830048,
35830146-35830235,35830549-35830647
Length = 377
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 10 RLLCMLCLTGGFFFVELIVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSK-N 68
RL ++ L + EL +G +T + LV+D+FH+ L + ++ S K
Sbjct: 69 RLALLIALNVAYSATELAIGLLTARVGLVSDAFHLTFGCGILTFSLFAMAASRTKPDHLY 128
Query: 69 TFGWARAEVLGALVNAV 85
T+G+ R EVL A NA+
Sbjct: 129 TYGYKRLEVLAAFTNAL 145
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 244 PLLRESSLILLQTVPTHIQVDAIQ---RRLKNVEGVMAVHEFHVWQLAGDRIIASAHIRC 300
PL + + ILLQ P ++ A+ R++ E V V + W+L + S IR
Sbjct: 287 PLFKATGNILLQIAPGNVPPSALTKCFRQITACEDVSEVCQGRFWELVPGHAVGSLDIRV 346
Query: 301 RNLSEYMKIAEKVKEFFHNEGIHSTTIQPE 330
+N + + + V + + GI TIQ +
Sbjct: 347 KNGGDCQSVLDYVHGLYQDLGIQDLTIQTD 376
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 27 IVGYITNSMALVADSFHMLSDVAALIIAFLSVKMSPKKWSK-NTFGWARAEVLGAL-VNA 84
+ GY++ S A+ AD+ H LSD+ +A LS K + K + +G + E LGAL +++
Sbjct: 96 VTGYLSGSTAIAADAAHSLSDIVLSGVALLSYKAAKAPRDKEHPYGHGKFESLGALGISS 155
Query: 85 VFLV 88
+ LV
Sbjct: 156 MLLV 159
>12_01_0778 +
7111562-7112152,7113034-7113157,7113252-7113395,
7113485-7113630,7113716-7113838,7113922-7114089,
7114253-7114474,7114572-7114745
Length = 563
Score = 33.9 bits (74), Expect = 0.20
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 253 LLQTVPTHIQVDAIQRRLKNVEGVMAVHEFHVWQLAGDRIIASAHIRCRNLSEYMKIAEK 312
+++++P H V ++ ++ + V V E DRI+A H R + M+
Sbjct: 135 IMRSLPAHANVVRLREAFEDADAVHLVMEVCEGGELFDRIVARGHYTERAAAAVMRTIMD 194
Query: 313 VKEFFHNEGIHSTTIQPE-FVEGPQDEN 339
V + H G+ ++PE F+ EN
Sbjct: 195 VVQHCHKNGVMHRDLKPENFLYANASEN 222
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 30.3 bits (65), Expect = 2.4
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 153 RALGHNSTDN--EETDEMVKKAKTQNHKSCKSSSDPGHMNMKGVFLHVLSDALG 204
+AL + DN + T +++A TQN+ SC +S DPG + + G +L +L +G
Sbjct: 301 KALSVDLFDNLIKFTKNRIEEAVTQNY-SCITSLDPGGLLLLGTYLDLLRLRVG 353
>03_06_0394 +
33592780-33593310,33593890-33594013,33594233-33594376,
33594463-33594615,33594973-33595088,33595253-33595420,
33595514-33595744,33596229-33596378
Length = 538
Score = 29.5 bits (63), Expect = 4.3
Identities = 16/78 (20%), Positives = 36/78 (46%)
Query: 253 LLQTVPTHIQVDAIQRRLKNVEGVMAVHEFHVWQLAGDRIIASAHIRCRNLSEYMKIAEK 312
+++ +P+H + +++ ++ + V V E DRI+A H R + + +
Sbjct: 115 IMRHMPSHPNIVSLRAAYEDEDNVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVE 174
Query: 313 VKEFFHNEGIHSTTIQPE 330
V + H G+ ++PE
Sbjct: 175 VVQMCHRHGVMHRDLKPE 192
>02_05_0528 -
29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 29.1 bits (62), Expect = 5.6
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 159 STDNEETDEMVKKAKTQNHKSC---KSSSDPGHMNMKGVFLHVLSDALGSLI 207
S D+ +T KTQN KS KSS N+ F H+ SD + S I
Sbjct: 811 SVDSTDTKTQKGHEKTQNQKSAEGQKSSLSASSKNIVPTFSHLTSDGIWSNI 862
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 28.7 bits (61), Expect = 7.4
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 169 VKKAKTQNHKSCKSSSDPGHMNMKGVFLHVLSDALG 204
+++A TQN+ SC +S DPG + + G +L +L +G
Sbjct: 324 IEEAVTQNY-SCITSLDPGGLLLLGTYLDLLRLRVG 358
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 28.3 bits (60), Expect = 9.8
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 260 HIQVDAIQRRLKNVEGVMAVHEFHVWQLAGDRIIASAHIRCRNLSEYMKIAEKVKEFFHN 319
H V +I+ ++ V V E DRI+ H R +E ++ V E H+
Sbjct: 191 HPNVISIRGAYEDAVAVHLVMELCAGGELFDRIVQKGHYTERKAAELARVIVGVVEVCHS 250
Query: 320 EGIHSTTIQPE-FVEGPQDE 338
G+ ++PE F+ Q E
Sbjct: 251 MGVMHRDLKPENFLFADQTE 270
>01_06_0171 - 27190072-27190645,27190800-27190955,27191932-27192359
Length = 385
Score = 28.3 bits (60), Expect = 9.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 163 EETDEMVKKAKTQNHKSCKSSSDPGHMNMKG 193
EE+ KK + +N + K D GH N KG
Sbjct: 113 EESPARCKKEEDENKEEGKGEEDEGHKNKKG 143
>01_01_0764 +
5910687-5910961,5912549-5912636,5912750-5912909,
5913017-5913237,5913315-5913610,5914176-5914287,
5914376-5914514,5914850-5915046,5915134-5915223,
5915611-5915646
Length = 537
Score = 28.3 bits (60), Expect = 9.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 1 MGRYSGKK--CRLLCMLCLTGGFFFVELIVGYITNSMALVA 39
+ R GK+ C +L MLCLT G FF ++ +S ++ A
Sbjct: 147 LSRKYGKRLACYVLAMLCLTSGCFFAS--TSFLPSSFSMYA 185
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.134 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,831,235
Number of Sequences: 37544
Number of extensions: 297392
Number of successful extensions: 787
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 15
length of query: 353
length of database: 14,793,348
effective HSP length: 83
effective length of query: 270
effective length of database: 11,677,196
effective search space: 3152842920
effective search space used: 3152842920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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