Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001129-TA|BGIBMGA001129-PA|IPR009057|Homeodomain-like,
IPR000818|TEA/ATTS, IPR001139|Glycoside hydrolase, family 30
         (671 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    26   0.97 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    25   1.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    25   1.7  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    25   1.7  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.8 bits (54), Expect = 0.97
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 74  RRKLREIQAKLKVDGGVMKEKAMQSMSTLSSAQIVAGLPHP 114
           ++  + I+ K ++D  +     MQ  ST    Q+V GLP P
Sbjct: 214 KQNKKRIEEKSQIDN-LFHNGFMQEQSTHHQGQLVVGLPAP 253


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 613 LSTEGIENVAVITPKGNVVVVMQNSILWSKFQ 644
           L+ +G   V +  P  N+VV   N   W ++Q
Sbjct: 48  LAPKGFGGVQISPPNENLVVTSSNRPWWERYQ 79


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 613 LSTEGIENVAVITPKGNVVVVMQNSILWSKFQ 644
           L+ +G   V +  P  N+VV   N   W ++Q
Sbjct: 49  LAPKGFGGVQISPPNENLVVTSSNRPWWERYQ 80


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 613 LSTEGIENVAVITPKGNVVVVMQNSILWSKFQ 644
           L+ +G   V +  P  N+VV   N   W ++Q
Sbjct: 49  LAPKGFGGVQISPPNENLVVTSSNRPWWERYQ 80


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,593
Number of Sequences: 317
Number of extensions: 7401
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 671
length of database: 114,650
effective HSP length: 61
effective length of query: 610
effective length of database: 95,313
effective search space: 58140930
effective search space used: 58140930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)