GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001129-TA|BGIBMGA001129-PA|IPR009057|Homeodomain-like,
IPR000818|TEA/ATTS, IPR001139|Glycoside hydrolase, family 30
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   2.8  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    28   4.8  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    28   4.8  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 404 PYTYNEQPWNDTELSNFSLTNEDISFKGRWIENNLGPT 441
           PY+ +E+PWN  +  N S     + + G W +++  P+
Sbjct: 28  PYSEDEEPWNLNQNKNASSV---LEYSGEWADHDFFPS 62


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 69  IQVLARRKLREIQAKLKVDGGVMKEKAMQSMSTLSSAQIVAGLPHPAYHHTQFWQP 124
           ++ L++  +RE+     +   +++   MQ+    S+ Q     PHPAY + + W+P
Sbjct: 155 VEGLSQTIMRELDPNWNIAITIVQPGGMQTEWASSNMQWAK--PHPAYENDRSWRP 208


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 298 HFSKFIYRGS-RRIQVSRRSLAPIEN-VGLLTPNEENLLLVLQNRVDSTIKF 347
           ++ K  + GS     +SR S   ++N +  L  +E+++L  LQN++DS +++
Sbjct: 181 NYEKRDWEGSLSAFSISRLSFLVLQNKIDTLAEHEKSVLGELQNQIDSNLRY 232


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,763
Number of Sequences: 5004
Number of extensions: 137606
Number of successful extensions: 294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 5
length of query: 671
length of database: 2,362,478
effective HSP length: 77
effective length of query: 594
effective length of database: 1,977,170
effective search space: 1174438980
effective search space used: 1174438980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)