GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001129-TA|BGIBMGA001129-PA|IPR009057|Homeodomain-like,
IPR000818|TEA/ATTS, IPR001139|Glycoside hydrolase, family 30
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0488 + 18674465-18674873,18675343-18675520,18675932-186760...    31   3.9  
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83...    30   5.2  
08_02_0924 - 22660615-22660623,22661035-22661193,22661664-226625...    30   6.9  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    30   6.9  
05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604           29   9.1  

>07_03_0488 +
           18674465-18674873,18675343-18675520,18675932-18676072,
           18677736-18677856,18678570-18678704,18679380-18679637
          Length = 413

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 383 PNGLEYNMMRVP--IGGSDFSTHPYTYNEQPWNDTELSN-FSLTNEDISFKGRWIENNLG 439
           PNG++    + P    G D++       ++P +  E+   FSL N   + + R +  +L 
Sbjct: 293 PNGVKLFRTQSPRHFEGGDWNEGGSCQRDKPLSAEEVEELFSLDNNGTNVEARLVNQHLV 352

Query: 440 PTIRKSVFNRTLILGVDDQR 459
             + KS FN   I G+ + R
Sbjct: 353 RALEKSTFNVLNITGMSEFR 372


>05_01_0121 -
           833885-833949,834180-834430,834545-834604,834893-834926,
           835746-835805,836409-836509,836939-837039,837209-837289,
           837580-837650,837738-837849,838138-838173,838865-838951,
           839055-839396
          Length = 466

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 479 YLDGIAVHYYEDFVSPEILTNLHKRYPTKIIVATEACEGAYPWETSKVKIGSWDRA 534
           YLD + V + +DF + E L  ++     K+++  E C      +TS V+   W RA
Sbjct: 387 YLDHLDVPW-QDFYTSEPLAGINNTAQQKLVLGGEVCMWGETADTSDVQQTIWPRA 441


>08_02_0924 -
           22660615-22660623,22661035-22661193,22661664-22662539,
           22663009-22663119,22663528-22663556,22663690-22663762,
           22664804-22665100,22665193-22665345,22665979-22666068,
           22667520-22667809,22667860-22668349
          Length = 858

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 490 DFVSPEILTNLHKRYPTKIIVATEACEGAY--PWETSKVKIGSWDRAQ 535
           D +  EIL N+  R   +  V T A  GA+   WETS      WDR +
Sbjct: 25  DCLPSEILENIVARLGIREAVRTSAVSGAWRRRWETSPGLSFEWDRGE 72


>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
            25541673-25541751,25542151-25542238,25542330-25542600,
            25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 29.9 bits (64), Expect = 6.9
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 319  PIENVGLLTPNEENLLLVLQNRVDSTIKFQTIEGFGGAVTDAASLNWRKLPPAAQDKLIE 378
            P E   L+   ++ L +   +++DS  K + + G G   T     NW  LPP+     + 
Sbjct: 1056 PEERHELVVEGQQGLTVETTSKLDSPGKIEVLNGAGFISTGIQ--NWLSLPPSINSMEMS 1113

Query: 379  TYFGPNGLEYNMMRVPIGGS 398
              F  NG   +  R+ +  S
Sbjct: 1114 GQFLNNGFTVSKGRLGLDQS 1133


>05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604
          Length = 312

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 464 AYMLGMEKAAPNSINYLDGIAVHYYEDFVSPEILTNLHKRYPTKIIVATEACEGAYPWET 523
           A +L +  A P +I Y DG A  YY      E LT L  +     IV TE  + A     
Sbjct: 23  AAVLAIGTANPANIVYQDGFA-DYYFGLTKSEYLTELKDKMKRIYIVTTEIPKLAE--SA 79

Query: 524 SKVKIGSWDRAQNYVKDII 542
           ++  I  W R    +  +I
Sbjct: 80  ARKAIAKWGRPATDITHLI 98


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,334,868
Number of Sequences: 37544
Number of extensions: 868288
Number of successful extensions: 1528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 5
length of query: 671
length of database: 14,793,348
effective HSP length: 87
effective length of query: 584
effective length of database: 11,527,020
effective search space: 6731779680
effective search space used: 6731779680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)