GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001129-TA|BGIBMGA001129-PA|IPR009057|Homeodomain-like,
IPR000818|TEA/ATTS, IPR001139|Glycoside hydrolase, family 30
         (671 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   3.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   8.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   8.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 221 FIHKLKHLPEKYMMNSVLE 239
           FI+ LK L +KY+ NS LE
Sbjct: 340 FINILKFLKQKYVKNSKLE 358



 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 531 WDRAQNYVKDIIEDLNNYVVGWIDWNL 557
           W+  Q   K  I+ +  Y++ W +W+L
Sbjct: 244 WEVEQILAKKEIKGVPTYLIKWKNWDL 270


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 299 FSKFIYRGSRRIQVSRRSLAPIENVGLL 326
           F+K    G     +S+ ++APIE V LL
Sbjct: 10  FAKDFLAGGVAAAISKTTVAPIERVKLL 37


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 299 FSKFIYRGSRRIQVSRRSLAPIENVGLL 326
           F+K    G     +S+ ++APIE V LL
Sbjct: 10  FAKDFLAGGVAAAISKTTVAPIERVKLL 37


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,854
Number of Sequences: 429
Number of extensions: 9206
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 4
length of query: 671
length of database: 140,377
effective HSP length: 62
effective length of query: 609
effective length of database: 113,779
effective search space: 69291411
effective search space used: 69291411
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)