Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001129-TA|BGIBMGA001129-PA|IPR009057|Homeodomain-like,
IPR000818|TEA/ATTS, IPR001139|Glycoside hydrolase, family 30
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64600.1 68414.m07322 expressed protein similar to Hypothetic... 33 0.81
At1g27385.1 68414.m03338 expressed protein 31 1.9
At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR ... 30 4.3
At5g28320.1 68418.m03438 expressed protein This is likely a pseu... 29 7.6
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 29 7.6
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 29 7.6
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 29 7.6
At2g45080.1 68415.m05611 cyclin family protein similar to cyclin... 29 7.6
At1g23210.1 68414.m02902 glycosyl hydrolase family 9 protein sim... 29 7.6
At1g30700.1 68414.m03753 FAD-binding domain-containing protein s... 29 10.0
>At1g64600.1 68414.m07322 expressed protein similar to Hypothetical
72.2 kDa protein in RPS27A-GPM1 intergenic region
(Swiss-Prot:P36056) [Saccharomyces cerevisiae]
Length = 537
Score = 32.7 bits (71), Expect = 0.81
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 64 QVSSHIQVLARRKLREIQAKLKVDGGVMKEKAMQSMSTLSSAQIVAGLPH 113
Q+ SHI + +RKLR+++ K+K DG + + S A IVA PH
Sbjct: 260 QMRSHILWMEKRKLRKLEKKMKKDG-------KEVLDLKSGAHIVAPCPH 302
>At1g27385.1 68414.m03338 expressed protein
Length = 202
Score = 31.5 bits (68), Expect = 1.9
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 328 PNEENLLLVLQ--NRVDSTIKFQTIEGFGGAVTDAASLNWRKLPPAAQDKLIETYFGPNG 385
P +E +L + ++ D + T GG V D ++ +W +L D+ + TY P
Sbjct: 73 PPQEAVLKAISEVSKTDGRVGKTTNMIIGGTVADDSAKDWLEL-----DQKVNTY--PT- 124
Query: 386 LEYNMMRVPIGGSDFSTHPYTYNEQPWNDTELSNFSLTNEDISFKGRWIENNLGP 440
E + GG+DF H + D ++ + +S KG+++ N+GP
Sbjct: 125 -ERGFTAIGTGGNDF-VHAMVVAVESVIDRQIPE-DCVKQTLSSKGKYVSVNIGP 176
>At1g12210.1 68414.m01413 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 885
Score = 30.3 bits (65), Expect = 4.3
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 42 YGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKLKVDGGVMKEKAMQSMST 101
+G +EL + + L+ +TR + +S + + R LR +K +D G+MKE +
Sbjct: 604 HGLHEL-RKLVHLKLERTRRLESISGISYLSSLRTLRLRDSKTTLDTGLMKELQLLEHLE 662
Query: 102 LSSAQIVAGL 111
L + I +GL
Sbjct: 663 LITTDISSGL 672
>At5g28320.1 68418.m03438 expressed protein This is likely a
pseudogene.
Length = 967
Score = 29.5 bits (63), Expect = 7.6
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 29 GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKLK--- 85
G K ++S E + RNEL++ K++ + + SSH+++ K+ EI+ +
Sbjct: 271 GLEKPLMSFEKPKFDRNELMSSISKVKGSEKKLELVNSSHVELDFDDKIHEIKVMARRAR 330
Query: 86 -VDGGV-MKEKAMQSMSTLS-------SAQIVAGLPHPAYHHTQ 120
++ G+ + EK + ++ + S Q LPH H++
Sbjct: 331 EIEAGIELNEKEKRDVNKETGDSDEDISIQSQKSLPHDGLTHSE 374
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 158 DVAPPPPWEGRAIATHKLRLVEFSAFVEHPRDPDTVETEYA 198
D+ PPW R LRL ++ V P+ PD+++ YA
Sbjct: 980 DIQEVPPWVKRMSRLRALRLNNCNSLVSLPQLPDSLDYIYA 1020
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 158 DVAPPPPWEGRAIATHKLRLVEFSAFVEHPRDPDTVETEYA 198
D+ PPW R LRL ++ V P+ PD+++ YA
Sbjct: 980 DIQEVPPWVKRMSRLRALRLNNCNSLVSLPQLPDSLDYIYA 1020
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 158 DVAPPPPWEGRAIATHKLRLVEFSAFVEHPRDPDTVETEYA 198
D+ PPW R LRL ++ V P+ PD+++ YA
Sbjct: 980 DIQEVPPWVKRMSRLRALRLNNCNSLVSLPQLPDSLDYIYA 1020
>At2g45080.1 68415.m05611 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 222
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 80 IQAKLKVDGGVMKEKAMQSMSTLSSAQIVAGLPHPAYHHTQF 121
++ ++ + GG EKA++ + S QIV H +HH QF
Sbjct: 178 LEREVSIGGGYQIEKALRCAEEIKSRQIVQDPKH--HHHHQF 217
>At1g23210.1 68414.m02902 glycosyl hydrolase family 9 protein
similar to endo-1,4-beta-glucanase GB:CAA67157
GI:2440035 from (Arabidopsis thaliana)
Length = 489
Score = 29.5 bits (63), Expect = 7.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 265 GGPNWADNFVDS-PILVYGDKDQFIKQPMFYAMGHFS 300
GGPN D+F DS P + +I P+ +G+FS
Sbjct: 450 GGPNITDDFPDSRPYFQLTEPTTYINAPLLGLLGYFS 486
>At1g30700.1 68414.m03753 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 29.1 bits (62), Expect = 10.0
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 385 GLEYNM-MRVPIGGSDFSTHPY-TYNEQPWNDTELSNFSLTNEDISFKGRWIE 435
G +N+ M++ GG D+ Y TY+ +P+ ++ N + D++ K W++
Sbjct: 94 GKRHNLQMKIRSGGHDYDGLSYVTYSGKPFFVLDMFNLRSVDVDVASKTAWVQ 146
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.136 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,564
Number of Sequences: 28952
Number of extensions: 701729
Number of successful extensions: 1387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 10
length of query: 671
length of database: 12,070,560
effective HSP length: 86
effective length of query: 585
effective length of database: 9,580,688
effective search space: 5604702480
effective search space used: 5604702480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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