Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001128-TA|BGIBMGA001128-PA|undefined
         (69 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   0.79 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   3.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   9.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 0.79
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 43  GADAKHLDVGDASDDEKVIENK 64
           GA AK       SDD+KVI +K
Sbjct: 331 GARAKKKSKKKESDDKKVISSK 352


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 34  GAPDTNGS--GGADAKHLDVGDASDDEKV 60
           GA + NG   G  D    D GD  DD+ V
Sbjct: 377 GAMNANGEAVGEVDEDDDDDGDDDDDDDV 405


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 28   PWSTPAGAPDTNG 40
            P+++P G P  NG
Sbjct: 1131 PFTSPGGIPGPNG 1143


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 51 VGDASDDEKVIENKLFMG 68
          VG  S+DE+ +   LF G
Sbjct: 20 VGLCSEDEERLVRDLFRG 37


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943
Number of Sequences: 429
Number of extensions: 433
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 140,377
effective HSP length: 45
effective length of query: 24
effective length of database: 121,072
effective search space:  2905728
effective search space used:  2905728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)
S2: 35 (18.2 bits)