Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001128-TA|BGIBMGA001128-PA|undefined
         (69 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10940.1 68414.m01256 serine/threonine protein kinase, putati...    26   2.7  
At1g66930.1 68414.m07606 serine/threonine protein kinase family ...    26   3.5  
At1g65090.1 68414.m07379 expressed protein                             26   3.5  
At2g11910.2 68415.m01278 expressed protein                             25   4.7  
At2g11910.1 68415.m01277 expressed protein                             25   4.7  
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei...    25   4.7  

>At1g10940.1 68414.m01256 serine/threonine protein kinase, putative
           similar to serine/threonine-protein kinase ASK1
           [Arabidopsis thaliana] SWISS-PROT:P43291
          Length = 363

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 28  PWSTPAGAPDTNGSGGADAKHLDVGDASDDEKVIENK 64
           P S   G     G+G AD K  D  D  ++E+ +E +
Sbjct: 304 PVSRSIGGFGWGGNGDADGKEEDAEDVEEEEEEVEEE 340


>At1g66930.1 68414.m07606 serine/threonine protein kinase family
           protein contains Pfam PF00069: Protein kinase domain
          Length = 674

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 37  DTNGSGGADAKHLDVGDASDDEKVIENKLFMGL 69
           D   +   D +H+++G +S++E++ +    +GL
Sbjct: 570 DLEKADNGDLEHIEIGISSEEEEIAKKMTLVGL 602


>At1g65090.1 68414.m07379 expressed protein
          Length = 284

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 35  APDTNGSGGADAKHLDVGDASDDEKVIENKLF 66
           AP+T   G   A  ++     DDE++  N+++
Sbjct: 182 APETRREGETGATKIETSTGKDDEEISSNEVY 213


>At2g11910.2 68415.m01278 expressed protein
          Length = 168

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 32  PAGAPDTNGSGGADAKHLDVGDASDDEKVIENK 64
           P   P TNG GG+D +  D  +  +D++  +N+
Sbjct: 113 PEDDPVTNGGGGSDDEDDDDEEGDNDDEDEDNE 145


>At2g11910.1 68415.m01277 expressed protein
          Length = 168

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 32  PAGAPDTNGSGGADAKHLDVGDASDDEKVIENK 64
           P   P TNG GG+D +  D  +  +D++  +N+
Sbjct: 113 PEDDPVTNGGGGSDDEDDDDEEGDNDDEDEDNE 145


>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
           contains Pfam PF00641: Zn-finger in Ran binding protein
           and others; contains Prosite PS00018: EF-hand
           calcium-binding domain; similar to Zinc finger protein
           265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
           musculus}
          Length = 849

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 34  GAPDTNGSGGADAKHLDVGDASDDEKVIE 62
           G    N  G +D K  DVGD  +  +VIE
Sbjct: 820 GGGGGNRHGHSDGKDTDVGDFRNSRRVIE 848


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,626
Number of Sequences: 28952
Number of extensions: 45192
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 12,070,560
effective HSP length: 49
effective length of query: 20
effective length of database: 10,651,912
effective search space: 213038240
effective search space used: 213038240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)