GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001128-TA|BGIBMGA001128-PA|undefined
         (69 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    24   2.8  

>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 40  GSGGADAKHLDVGDASDDEKVIENKLFM 67
           GS  ADA  L+  D  DDE   ++  FM
Sbjct: 361 GSSNADADELEDEDEDDDEFDEDDDAFM 388


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,659
Number of Sequences: 5004
Number of extensions: 7524
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 1
length of query: 69
length of database: 2,362,478
effective HSP length: 49
effective length of query: 20
effective length of database: 2,117,282
effective search space: 42345640
effective search space used: 42345640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)