Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001128-TA|BGIBMGA001128-PA|undefined
(69 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0327 + 2377121-2377812,2377911-2378265 27 2.5
06_01_0322 - 2335577-2335931,2336030-2336991 27 2.5
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764... 27 2.5
11_02_0021 + 7443459-7443530,7443994-7444065,7444140-7444213,744... 26 3.3
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 26 3.3
03_06_0674 - 35449373-35449465,35449959-35450112,35450763-354508... 26 3.3
03_05_0473 - 24670411-24671259 26 4.3
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 26 4.3
07_01_0930 + 7822669-7823265,7823368-7823466,7823563-7823783,782... 25 5.7
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 25 7.5
03_02_0539 - 9329572-9330729,9330988-9331041 25 7.5
03_02_0206 + 6402526-6403933,6405018-6405637 25 7.5
06_03_0830 + 25159758-25162460 25 9.9
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 25 9.9
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 25 9.9
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 25 9.9
03_01_0654 - 4791998-4792085,4792250-4792674 25 9.9
02_01_0237 - 1570395-1571225,1572225-1572245,1572336-1572506,157... 25 9.9
>06_01_0327 + 2377121-2377812,2377911-2378265
Length = 348
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 42 GGADAKHLDVGDASDDEKVIENK 64
GGA K V DASDDE VI K
Sbjct: 36 GGAAGKIYVVTDASDDEMVIPRK 58
>06_01_0322 - 2335577-2335931,2336030-2336991
Length = 438
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 42 GGADAKHLDVGDASDDEKVIENK 64
GGA K V DASDDE VI K
Sbjct: 126 GGAAGKIYVVTDASDDEMVIPRK 148
>05_05_0208 +
23275931-23275996,23276084-23276196,23276279-23276459,
23276590-23276674,23276974-23277104,23277194-23277432,
23277512-23277748,23277838-23277992,23278039-23278271,
23278359-23278521,23278613-23278818,23278960-23279019,
23279106-23279198,23279406-23279569,23280070-23280138,
23280241-23280382,23280490-23280546
Length = 797
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 34 GAPDTNGSGGADAKHLDVGDASDDEKV 60
G D + S G D +DVG+AS+D+ V
Sbjct: 702 GNADEHRSSGNDPMDVDVGNASNDQDV 728
>11_02_0021 +
7443459-7443530,7443994-7444065,7444140-7444213,
7444322-7444463,7445083-7445161,7445975-7446040,
7446951-7447115,7447608-7447690
Length = 250
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 37 DTNGSGGADAKHLDVGDASDDEKV 60
+T SG D + LDVGD ++ K+
Sbjct: 191 NTTESGSDDQRKLDVGDMKEENKI 214
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 28 PWSTPAGAPDTNGSGGADAKHLDVGDASDDEKVIENKLFMGL 69
P +P D N D KH DV D D+ V +++ GL
Sbjct: 363 PGPSPEAKNDLNIKDKMDDKHADVIDLDADDSVFQHEHKKGL 404
>03_06_0674 -
35449373-35449465,35449959-35450112,35450763-35450860,
35450947-35451234,35451313-35451503,35451789-35452006,
35452314-35452653,35452726-35453167
Length = 607
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 28 PWSTPAGAPDTNGSGGADAKHLDV 51
P ST AG P G+G A + H V
Sbjct: 556 PCSTVAGVPKNKGNGAASSTHKSV 579
>03_05_0473 - 24670411-24671259
Length = 282
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 28 PWSTPAGAPDTNGSGGADAKHLDVGDASDDEKVIE 62
PW PA A T G GG ++ + D + KV E
Sbjct: 230 PWGMPAPA-TTTGGGGGGKQYWQLSDEELNRKVEE 263
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 34 GAPDTNGSGGADAKHLDVGDASDDE 58
G P+ NG GG+D D G+ DDE
Sbjct: 108 GDPEANGEGGSDDD--DGGEDDDDE 130
>07_01_0930 +
7822669-7823265,7823368-7823466,7823563-7823783,
7824319-7824388,7824493-7824572,7825373-7825437,
7826476-7826669
Length = 441
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 30 STPAGAPDTNGSGGADAKHLDVGDASDDE 58
S+ G NG GG D GD DDE
Sbjct: 122 SSGGGGDGDNGGGGGGGDGGDGGDEGDDE 150
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 36 PDTNGSGGADAKHLDVGDASDDE 58
P+ NG GG+D + D D D++
Sbjct: 122 PEANGDGGSDDEDDDDDDGGDED 144
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 29 WSTPAGAPDTNGS-GGADAKHLDVG 52
W+ G P + GG DA+HL VG
Sbjct: 15 WNNQQGQPPRPANVGGGDAQHLPVG 39
>03_02_0206 + 6402526-6403933,6405018-6405637
Length = 675
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 31 TPAGAPDTNGSGGADAKHLDVGDASDDEK 59
TPAG+P+ +GG A D G AS K
Sbjct: 234 TPAGSPEVQPAGGGAA---DAGGASSGTK 259
>06_03_0830 + 25159758-25162460
Length = 900
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 37 DTNGSGGADAKHLDVGDASDDE 58
+ N GG D LD+ D+SDDE
Sbjct: 322 EKNTVGGWDLAPLDMQDSSDDE 343
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 36 PDTNGSGGADAKHLDVGDA----SDDEK 59
PD N GA+ K D+ +A SDDEK
Sbjct: 119 PDVNKDPGAEQKFKDISNAYEVLSDDEK 146
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 36 PDTNGSGGADAKHLDVGDA----SDDEK 59
PD N GA+ K D+ +A SDDEK
Sbjct: 119 PDVNKDPGAEQKFKDISNAYEVLSDDEK 146
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 36 PDTNGSGGADAKHLDVGDA----SDDEK 59
PD N GA+ K D+ +A SDDEK
Sbjct: 119 PDVNKDPGAEQKFKDISNAYEVLSDDEK 146
>03_01_0654 - 4791998-4792085,4792250-4792674
Length = 170
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 35 APDTNGSGGADAKHLDVG-DASDDEKVIE 62
AP TN SG D + LD+ +A D +V++
Sbjct: 29 APSTNPSGNCDLQPLDLSPEAPDLREVVD 57
>02_01_0237 -
1570395-1571225,1572225-1572245,1572336-1572506,
1572942-1573070,1574364-1574657
Length = 481
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 39 NGSGGADAK--HLDVGDASDDEK 59
NG GGADAK +L+ D DD++
Sbjct: 31 NGRGGADAKEDYLNWDDDDDDDE 53
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.130 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,718
Number of Sequences: 37544
Number of extensions: 68967
Number of successful extensions: 212
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 18
length of query: 69
length of database: 14,793,348
effective HSP length: 49
effective length of query: 20
effective length of database: 12,953,692
effective search space: 259073840
effective search space used: 259073840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)
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