GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001128-TA|BGIBMGA001128-PA|undefined
         (69 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    28   1.2  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   27   2.1  
SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)                 27   2.8  
SB_14247| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74)                  25   6.4  
SB_10944| Best HMM Match : efhand (HMM E-Value=7.4e-24)                25   8.5  

>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 28  PWSTPAGAPDTNGSGGADA 46
           P  TPA APD+ GS  ADA
Sbjct: 764 PNETPAAAPDSEGSTSADA 782


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 30   STPAGAPDTNGSGGADAKHLDVGDASDDEKVIENKLFMGL 69
            S   G  D NG    D     V D  DD++V+ N LF  +
Sbjct: 2091 SNDDGDDDDNGDDDDDDDDDIVDDVDDDDEVVVNALFAAI 2130


>SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)
          Length = 256

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 34  GAPDTNGSGGADAKHLDVGDASDDE 58
           G  D  G GG +    D+GD +DD+
Sbjct: 208 GHDDNGGDGGGNDDDDDIGDGNDDD 232


>SB_14247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 31  TPAGAPDTNGSGGADAKHLDVGDASDDEKVI 61
           TP G     GSGG   K  D  D SD + V+
Sbjct: 82  TPLGVQQGGGSGGVKRKR-DPEDVSDKDDVV 111


>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 37 DTNGSGGADAKHLDVGDASDDE 58
          D +G GG D   +D GD  DD+
Sbjct: 27 DDDGGGGDDDNDVDDGDDDDDD 48


>SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74)
          Length = 637

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 31  TPAGAPDTNGSGGADAKHLDVGDASDDEKVI 61
           TP G     GSGG   K  D  D SD + V+
Sbjct: 82  TPLGVQQGGGSGGVKRKR-DPEDVSDKDDVV 111


>SB_10944| Best HMM Match : efhand (HMM E-Value=7.4e-24)
          Length = 127

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 37 DTNGSGGADAKHLDVGDASDDEKVIENKLF 66
          DT+GSG  DAK L     S +E +   KLF
Sbjct: 39 DTDGSGTIDAKELKSEKDSKEEILKAFKLF 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,262
Number of Sequences: 59808
Number of extensions: 58880
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 7
length of query: 69
length of database: 16,821,457
effective HSP length: 48
effective length of query: 21
effective length of database: 13,950,673
effective search space: 292964133
effective search space used: 292964133
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)