GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001128-TA|BGIBMGA001128-PA|undefined
         (69 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    27   2.1  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    27   2.1  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    26   3.7  
AL110485-11|CAE18011.1|  100|Caenorhabditis elegans Hypothetical...    25   4.9  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z68113-2|CAA92149.2|  327|Caenorhabditis elegans Hypothetical pr...    25   8.6  
U33919-1|AAA96505.1|  327|Caenorhabditis elegans MEC-5 precursor...    25   8.6  
U33918-1|AAA96504.1|  327|Caenorhabditis elegans MEC-5 protein.        25   8.6  
L23651-12|AAA27958.1|  305|Caenorhabditis elegans Collagen prote...    25   8.6  

>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 32  PAGAPDTNGSGGADAKHLDVGDASDD 57
           PAGAP  +G+ G D K  + G A  D
Sbjct: 121 PAGAPGKDGAPGEDGKAGNPGTAGSD 146


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 32  PAGAPDTNGSGGADAKHLDVGDASDD 57
           PAGAP  +G+ G D K  + G A  D
Sbjct: 134 PAGAPGKDGAPGEDGKAGNPGTAGSD 159


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 32  PAGAPDTNGSGGADAKH 48
           PAGAP T+G+ G DA +
Sbjct: 281 PAGAPGTDGAPGPDAAY 297


>AL110485-11|CAE18011.1|  100|Caenorhabditis elegans Hypothetical
          protein Y46G5A.34 protein.
          Length = 100

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 31 TPAGAPDTNGSGGADAKHLDVGDAS 55
          TP GA   N SGGA       GDA+
Sbjct: 42 TPGGAKSANKSGGAGGGSGGAGDAN 66


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 33  AGAPDTNGSGGADAKHLDVGDASDDEKVIE 62
           AGAP  +G+ GADA +      S     +E
Sbjct: 253 AGAPGNDGAPGADAAYCPCPSRSGSSSAVE 282


>Z68113-2|CAA92149.2|  327|Caenorhabditis elegans Hypothetical
          protein E03G2.3 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 34 GAPDTNGSGGADAKHLDVGDASDD 57
          G P TNGS G      + GD S+D
Sbjct: 58 GPPGTNGSPGFPGSKGEKGDRSED 81


>U33919-1|AAA96505.1|  327|Caenorhabditis elegans MEC-5 precursor
          protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 34 GAPDTNGSGGADAKHLDVGDASDD 57
          G P TNGS G      + GD S+D
Sbjct: 58 GPPGTNGSPGFPGSKGEKGDRSED 81


>U33918-1|AAA96504.1|  327|Caenorhabditis elegans MEC-5 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 34 GAPDTNGSGGADAKHLDVGDASDD 57
          G P TNGS G      + GD S+D
Sbjct: 58 GPPGTNGSPGFPGSKGEKGDRSED 81


>L23651-12|AAA27958.1|  305|Caenorhabditis elegans Collagen protein
           90 protein.
          Length = 305

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 32  PAGAPDTNGSGGADAKHLDVGDASD 56
           P GAP T GS G DA     G A +
Sbjct: 239 PKGAPGTPGSNGRDAYPGQPGKAGE 263


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,048
Number of Sequences: 27539
Number of extensions: 46308
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 10
length of query: 69
length of database: 12,573,161
effective HSP length: 49
effective length of query: 20
effective length of database: 11,223,750
effective search space: 224475000
effective search space used: 224475000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)