Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001127-TA|BGIBMGA001127-PA|undefined
         (169 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02370.1 68417.m00321 expressed protein contains Pfam profile...    27   5.0  
At4g00260.1 68417.m00033 transcriptional factor B3 family protei...    27   5.0  
At2g27290.1 68415.m03280 expressed protein                             27   6.6  
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ...    27   8.7  

>At4g02370.1 68417.m00321 expressed protein contains Pfam profile
           PF04398: Protein of unknown function, DUF538
          Length = 167

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 72  LIGSLYYNYHKERNSFIGDEKV-RVQANKLGEACYWLNLIELL 113
           L+GS   NY    + +I + K+ ++   K+     WLN++E++
Sbjct: 74  LVGSYQLNYKSTISGYISENKLKKLTGVKVKVLFLWLNIVEVI 116


>At4g00260.1 68417.m00033 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 528

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 63  IAFH---LGPRLLIGSLYYNYHKERNSFIGDEKVRVQANKLGEA 103
           +AFH   LGP    G  Y +   E+N+ +GDEK +V+ N  GEA
Sbjct: 85  LAFHVTLLGPSCC-GIQYGSCSVEKNN-LGDEKKKVKENPNGEA 126


>At2g27290.1 68415.m03280 expressed protein
          Length = 201

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 111 ELLALTGVTYVSNRENYSFTWFSVCEYILATTNMAFHAIVVR 152
           ELLA  G  Y++     S   FS+C Y+L T+ +   A++++
Sbjct: 105 ELLAKYGGAYLATSITLSLISFSLC-YVLVTSGVDVQALLLK 145


>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
           protein / G-protein (XLG) identical to extra-large
           G-protein (XLG) [Arabidopsis thaliana] GI:3201680
          Length = 888

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 85  NSFIGDEKVRVQANKLGEACYWLNLIELLALTGVTYVSNRENY 127
           +S +  + +RV +  LGE C W+++ E + +  V +V +  +Y
Sbjct: 697 DSLLRYQLIRVPSRGLGENCKWIDMFEDVGM--VVFVVSMSDY 737


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.141    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,084,930
Number of Sequences: 28952
Number of extensions: 155489
Number of successful extensions: 361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 4
length of query: 169
length of database: 12,070,560
effective HSP length: 76
effective length of query: 93
effective length of database: 9,870,208
effective search space: 917929344
effective search space used: 917929344
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)