GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001127-TA|BGIBMGA001127-PA|undefined
         (169 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.48 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   3.4  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   3.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   5.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   7.8  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 83  ERNSFIGDEKVRVQANKLGEACYWLNLIELLALTGVTYVSNRENYS----FTWFSVCEYI 138
           +R    G+  +RV     G  C+W   +    +T +++ S+ ENYS    F WF   + +
Sbjct: 471 DRLVLAGNGGLRVYDTVTG-LCHWHMPLGDTKVTSLSFKSSPENYSDDGRFVWFGTRDGM 529

Query: 139 LATTNMAFHAIVVR 152
           L   ++  H IV +
Sbjct: 530 LWEVDVQNHHIVTK 543


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 118  VTYVSNRENYSFTWFSVC--EYILATTNMAFHAIVVR 152
            + Y SNR +++F  FSVC    ++ +T   F   V R
Sbjct: 1494 INYASNRYSFNFFLFSVCFQSLLIPSTLQGFRNPVFR 1530


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 7   LAALWLPLGALIFCYVTASMFQADDIHETHCKVYNVVPSISAITGISPQRY--IWRICIA 64
           + ALW  +GA++  Y  A +F +    E    V+ +V S SAI  +S   Y  +  + + 
Sbjct: 155 VGALWSTVGAVVLGYGFARIF-STVFQELRNSVFAIV-SQSAIRSVSSNVYQHLLNLDMN 212

Query: 65  FHL 67
           FHL
Sbjct: 213 FHL 215


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 44 PSISAITGI-SPQRYIWRICIAFHLGPRLLIGSLYY 78
          PS+SA  G   P+R +++  IA    PRLL+  L++
Sbjct: 56 PSVSATIGDWYPERSVFQWLIALTATPRLLVLLLWF 91


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 100 LGEACYWLN--LIELLALTGVTYVSNRENYSFTWFSVCEYILATTNMAFHAIVVRDLPLH 157
           LG+ C +LN  L+ L + +GV +  N  +  + +       L T ++  ++I + D P  
Sbjct: 289 LGKFCSFLNHNLLSLCSPSGVLFGHNDIDTIYVYILTHSGTLETFSLLDNSISMLDSPER 348

Query: 158 H-LQVVYPDHKRN 169
           H L+    +H +N
Sbjct: 349 HVLEKFLNNHLQN 361


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.141    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,512
Number of Sequences: 5004
Number of extensions: 31825
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 5
length of query: 169
length of database: 2,362,478
effective HSP length: 68
effective length of query: 101
effective length of database: 2,022,206
effective search space: 204242806
effective search space used: 204242806
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)