GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001127-TA|BGIBMGA001127-PA|undefined
         (169 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63...    28   3.4  
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     28   4.5  
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471...    27   6.0  

>06_01_0079 -
           633595-633985,634346-634543,634864-635036,635355-635599,
           635683-635860,636291-636473,636769-636873,637709-637846,
           637933-638925
          Length = 867

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 63  IAFHLGPRLLIGSLYYNYHKERNSFIGD-EKVRVQANKLGEACYWLNLIE 111
           I F L  R  +  +Y + H+  +  +   + +RV A  + E C W+ + E
Sbjct: 645 IEFTLDDRSPMSEMYTDNHEPHSQTLNKYQLIRVSAKGMNEGCKWVEMFE 694


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 15  GALIFCYVTASMFQADDIHETHCKVYNVVPSISAITGISPQRYIWRICIAFHL-GPRLLI 73
           G   F  +  S+F  D + +   KVY + P    I  I P   IW      HL G   L+
Sbjct: 357 GKSAFLKLDDSIFLLDIVAKNMTKVYEICPEDGDIERIYPLLMIWPPKFPAHLTGLCTLV 416

Query: 74  GSLYYNYHKERNSFIGDEKVRVQANKLGEACYWLNL 109
             +   +  ER   I   K  ++ + L  A + L+L
Sbjct: 417 YLVDNQFLLERGMKILGGKCVLRTSDLSRALHSLSL 452


>12_02_0699 +
           22245933-22246213,22246493-22246575,22246844-22247125,
           22248725-22248986,22250146-22251781,22251910-22252416
          Length = 1016

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 100 LGEACYW-LNLIELLALTGVTYVSNRENYSFTWFSVCEYILATTNM 144
           LG+  +W L +I L+   GV+ +   E   +TW S   +  AT  +
Sbjct: 285 LGKKDFWCLTIITLVQTAGVSDIFLNEKLRYTWRSFLGFFSATDTL 330


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.141    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,930,537
Number of Sequences: 37544
Number of extensions: 182389
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 4
length of query: 169
length of database: 14,793,348
effective HSP length: 77
effective length of query: 92
effective length of database: 11,902,460
effective search space: 1095026320
effective search space used: 1095026320
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 57 (27.1 bits)