GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001127-TA|BGIBMGA001127-PA|undefined
         (169 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)                  31   0.50 
SB_14097| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   1.5  
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)                     29   2.6  
SB_25260| Best HMM Match : PqiA (HMM E-Value=0.3)                      28   3.5  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
          Length = 651

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 94  RVQANKLGEACYWLNLIELLALTGVTYVSNRENYSFTWFSVCEYILATTN 143
           RV ANKL +AC    ++  L + GV     RE + FT +S   YI+   N
Sbjct: 501 RVTANKLVDACECERVVVHLVVEGVL----REEFHFTPYSTISYIVKGAN 546


>SB_14097| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 431

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 61 ICIAFHLGPRLLIGSLYYNYHK 82
          IC++FH GP L + S Y+N ++
Sbjct: 6  ICLSFHYGPMLFLKSNYHNCYR 27


>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 948

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 115 LTGVTYVSNRENYSFTWFSVCEYILATTNMAFHAIVVRDLPLHHLQVV 162
           LT V   S RE YS    S  ++ L+T+N+A HA+    L +  L+ +
Sbjct: 497 LTEVNKESKREMYSVKQ-SFAQHSLSTSNLAAHAVQAAPLDIQGLKTL 543


>SB_25260| Best HMM Match : PqiA (HMM E-Value=0.3)
          Length = 365

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 12  LPLGALIFCYVTASMFQADDIHETHCKVYNVVPSISAITGISPQRYIWRICIAFHLGPRL 71
           L LG+++  Y+ A +         H  VY  +P++S    +SP++YI+R     +L   L
Sbjct: 127 LTLGSMLTSYIVAFI---------HGHVYPFMPAVSDTGVLSPEKYIFR--ELNNLASFL 175

Query: 72  LIGSLYYNYHKERNSFIGDEKVRVQANKLGEACYWLNLIELLALTGVTYVSNRE 125
            I + +  Y + +   I  E+ R ++ KL         I  L+   +T+V+N E
Sbjct: 176 FIATCFVRYMQYQ---IVAEQCREESVKLSRLNKLTFGIGTLSGVSMTFVANFE 226


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 32  IHETHCKVYNVVPSISAI--TGISPQRYIWRICIAFHLGPRLLIGSL 76
           +++  CK + +  S++    TG   Q  +W I I   + P L++G L
Sbjct: 120 VYDASCKPHPLANSVNECMHTGPPLQPLMWDIMIRARMAPHLILGDL 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.141    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,774,728
Number of Sequences: 59808
Number of extensions: 209507
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 5
length of query: 169
length of database: 16,821,457
effective HSP length: 77
effective length of query: 92
effective length of database: 12,216,241
effective search space: 1123894172
effective search space used: 1123894172
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 57 (27.1 bits)