GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001127-TA|BGIBMGA001127-PA|undefined
         (169 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical p...    83   8e-17
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    46   2e-05
AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical ...    41   5e-04
AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical ...    38   0.005
AF016668-5|AAB66093.1|  352|Caenorhabditis elegans Hypothetical ...    28   4.0  
AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z35663-10|CAA84731.1|  278|Caenorhabditis elegans Hypothetical
           protein T04A8.12 protein.
          Length = 278

 Score = 83.4 bits (197), Expect = 8e-17
 Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 16/148 (10%)

Query: 5   ICLAALWLPLGALIFCYVTASMFQADDIHETHCKVYNVVPSISA-ITGISPQRYIWRICI 63
           IC+  L  P  AL+ C + + +   D    THC+V N +PSISA ++  +P++YIWRI I
Sbjct: 33  ICIGGL--PSSALLICVILSLLLHFDQATSTHCEVANWLPSISAAVSTYTPEKYIWRILI 90

Query: 64  AFHLGPRLLIGSLYYNY--HKERNSFIGDEKVRVQANKLGEACYWLNLIELLALTGVTYV 121
             H+GPRL++   + N+          G +++R   N    AC+ LNL+E   L  +T +
Sbjct: 91  GLHIGPRLVVAIAFRNFLLGSPLRPLTGHKRLRFLCNL---ACF-LNLLENFFLLALTSI 146

Query: 122 SNRENYS-----FTWFSVCE--YILATT 142
           S+ E++S     F  F++C   Y+L +T
Sbjct: 147 SSSEDHSLHAKCFGGFAICSIIYMLLST 174


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 12/153 (7%)

Query: 4   QICLAALWLPLGALIFCYVTASMFQADDIHETHCKVYNV-VPSISAITGISPQRYIWRIC 62
           ++ LA    P+   I     A +F  D+I   + +     +PS+S I  +  +R  W++ 
Sbjct: 46  EVFLAGFIPPMFGSISAIAIALIFHNDEISNYNWQCGRARLPSLSRIINLPVERTFWQLF 105

Query: 63  IAFHLGPRLL-IGSLYYNYHKERNSFIGDEKVRVQANKLGEACYW-LNLIELLALTGVTY 120
           + FH+  R++ + + +  Y + RN        RV   +L    Y+ + L+EL+ L+G++ 
Sbjct: 106 LLFHVPIRVVELITGFSRYKRMRNV----NYKRVWLYELSRYLYFVVGLLELIFLSGLSI 161

Query: 121 VSNRENYS-----FTWFSVCEYILATTNMAFHA 148
           +  REN       F  F +C  +   +N+  HA
Sbjct: 162 IGERENIQVHVIFFYVFGICGIVHMISNIFCHA 194


>AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical
           protein Y38F1A.8 protein.
          Length = 303

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 5   ICLAALWLPLGALIFCYVTASMFQADDIHE-THCKV---YNV-VPSISAITGI-SPQRYI 58
           +CL AL LP     F      +FQ + +   T CK     N+ +P +S   GI  PQ+YI
Sbjct: 47  VCLGAL-LPGAGCYFVVAYTYLFQFEKVSNFTECKECPNMNITLPPVSYSIGIWQPQKYI 105

Query: 59  WRICIAFHLGPRLLIGSLY 77
           W + +  H+ PRL    LY
Sbjct: 106 WMMIMFIHVPPRLFFLMLY 124


>AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical
           protein ZK185.4 protein.
          Length = 281

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 13  PLGALIFCYVTASMFQADDIHETHCKVYNV-VPSISAITGISPQRYIWRICIAFHLGPRL 71
           PL A +F  +TA +   D I           +PS+S I  ++ +  +W++CI FH+  RL
Sbjct: 36  PLFAAVFAILTAIILHQDKITNYAWICGRAFLPSLSRIINLTLEGLVWQLCIFFHIPFRL 95

Query: 72  LIGSLYYNYHKERNSFIGDEKVRVQANKLGEACYWLNLIELLALTGVTYVSNREN 126
           L  S+ +  +    S     ++  + ++         + EL+ L+G++ +  +E+
Sbjct: 96  LELSVGWVRYGRLESRANTHRLWYKMHR--HLYLVFGVTELILLSGLSAIGEKEH 148


>AF016668-5|AAB66093.1|  352|Caenorhabditis elegans Hypothetical
           protein F36H9.5 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 117 GVTYVSNRENYSFTWFSVCEYILATTNMAFHAIVVRDLPLHHLQ-VVYP 164
           G T  S   +Y    F++ EY L    + FH + + D  LHHLQ + YP
Sbjct: 267 GWTKESLCHSYIPRHFAIMEYSLFLAYITFHLLSLLD--LHHLQFICYP 313


>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 76  LYYNYHKERNSFIGDEKVRVQANKLGEACYWLNLIELLALTGVTYVSN 123
           L Y Y+  RN    ++ + ++   +G   YW+       LT  TYV N
Sbjct: 86  LMYFYYMTRNRRFLNKVISIELGIIGIVVYWVAHSTNSHLTKTTYVGN 133


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.328    0.141    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,308,626
Number of Sequences: 27539
Number of extensions: 166896
Number of successful extensions: 380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 9
length of query: 169
length of database: 12,573,161
effective HSP length: 76
effective length of query: 93
effective length of database: 10,480,197
effective search space: 974658321
effective search space used: 974658321
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 56 (26.6 bits)