Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001126-TA|BGIBMGA001126-PA|IPR002005|Rab GTPase
activator, IPR000632|Yeast Mrs6p protein
         (523 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   5.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   9.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 5.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 240 CLEGVKECKKFLMSLGRYGNTP 261
           C    K C    + L RYG+TP
Sbjct: 292 CSYATKYCHSLKIHLRRYGHTP 313


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 178 VEKRMLMKML--TSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYI 227
           +E  M+   L  T    Y  E  NN FK ++N T   Y +   L+ +  + I
Sbjct: 80  IESNMISFYLEATDDFAYFLEVSNNNFKTYSNVTTCSYYSLDDLSEDTFYDI 131


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,559
Number of Sequences: 317
Number of extensions: 5923
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 523
length of database: 114,650
effective HSP length: 60
effective length of query: 463
effective length of database: 95,630
effective search space: 44276690
effective search space used: 44276690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)