Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001126-TA|BGIBMGA001126-PA|IPR002005|Rab GTPase
activator, IPR000632|Yeast Mrs6p protein
(523 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 212 7e-55
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 108 1e-23
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14) 68 2e-11
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.18
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.3
SB_35013| Best HMM Match : Exo_endo_phos (HMM E-Value=0.027) 32 1.3
SB_12999| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-10) 32 1.3
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 31 2.3
SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_47851| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 30 4.0
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.2
SB_4102| Best HMM Match : Geminin (HMM E-Value=3.6) 30 5.2
SB_31879| Best HMM Match : Exo_endo_phos (HMM E-Value=1.4) 29 6.9
SB_38561| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4) 29 6.9
SB_24253| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 29 9.2
SB_52435| Best HMM Match : RYDR_ITPR (HMM E-Value=1.4) 29 9.2
SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5) 29 9.2
SB_8021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.2
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 212 bits (517), Expect = 7e-55
Identities = 94/196 (47%), Positives = 140/196 (71%), Gaps = 2/196 (1%)
Query: 106 ADFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCS 165
+D +R+FNID PKLL SRG LVE LIS+NI+ YAEF+ V ++LT+L + VPCS
Sbjct: 316 SDLEPYHRQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCS 375
Query: 166 RADVFATEAVGIVEKRMLMKMLTSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLTPNLIH 225
R+DVF+++ + ++EKR+LMK LT + ++E E+K + +K E+L + +TPNL H
Sbjct: 376 RSDVFSSKLIPVIEKRLLMKFLTFCLDHNEHL--EEYKPFEDKPFVEFLKSRRMTPNLQH 433
Query: 226 YILYAIAGGNNSLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGG 285
++++AIA ++G+ + FLMSLGRYGN+PF+WP+YG GELPQ +CR+CAVFGG
Sbjct: 434 FVIHAIAMVKPDALTIDGLNAAQSFLMSLGRYGNSPFIWPLYGLGELPQAYCRMCAVFGG 493
Query: 286 VYCLNRPIDKVETKTV 301
+YCL++ I + + + V
Sbjct: 494 LYCLHKSIKQAKEENV 509
Score = 79.8 bits (188), Expect = 5e-15
Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 3/68 (4%)
Query: 4 EDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFI--- 60
EDFPT++ IV+GTG+ E++VAAA SRIG VLH+D +D+Y WAS+ F+GL K+I
Sbjct: 2 EDFPTEYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFTFDGLLKWIQRN 61
Query: 61 KEVNSDPD 68
+E+ D D
Sbjct: 62 QEILEDDD 69
Score = 47.2 bits (107), Expect = 3e-05
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 473 VEQAEQIFKKIC-PGEEFLPRAPNPEEIVFEDDVTHGPE 510
V A+ IF KIC P EEFLP PNPE+I+ +D +T G E
Sbjct: 543 VHLAKDIFTKICGPDEEFLPAVPNPEDIILDDFLTAGNE 581
Score = 39.9 bits (89), Expect = 0.005
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 342 CDISKAVFVTNGTIMASEKEPLTLLRFPPLADDDNAVTVLEVGPATGSCPKGLFVVY 398
C + ++ + +I +++E +T+L P + D + V VLE+ +T +CP GL++V+
Sbjct: 488 CAVFGGLYCLHKSIKQAKEENVTMLTMPAASPDASPVLVLELSNSTQACPCGLYLVH 544
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 108 bits (259), Expect = 1e-23
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 13/202 (6%)
Query: 107 DFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIA-RYAEFRCVTRVLTWLNDQLMPVPCS 165
D + R +N+D PK L + G LV++L+ + +A +Y F+ + + + VP +
Sbjct: 64 DSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKVPAN 123
Query: 166 RADVFATEAVGIVEKRMLMKMLTSIVGYSEEEMNNEFKDW-------NNKTLKEYLTHKG 218
+ + +GI EKR L +G E E + +KD+ T+ +
Sbjct: 124 EKEALNSSLMGIFEKRRFRNFLIFALGV-EPENASTWKDYAGGNFDPKKTTMNDVFKAYD 182
Query: 219 LTPNLIHYILYAIAGGNN----SLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQ 274
L+ + + +AIA + S PC E + K + SL +YG +P+++P+YG GELPQ
Sbjct: 183 LSQDTADFTGHAIALYRDDEYMSKPCEEAIMRIKLYYQSLSKYGGSPYIYPVYGLGELPQ 242
Query: 275 CFCRLCAVFGGVYCLNRPIDKV 296
F RLCAV+GG Y L++ ID+V
Sbjct: 243 GFARLCAVWGGTYMLDKAIDEV 264
Score = 39.1 bits (87), Expect = 0.009
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 9 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 50
++ +V+GTG+ E +++ S K VLHMD + +YGG AS
Sbjct: 4 EYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCAS 45
>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
Length = 175
Score = 67.7 bits (158), Expect = 2e-11
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 218 GLTPNLIHYILYAIAGGNNSL----PCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELP 273
GL N ++ +A+A N P + V++ K + SL RYG +P+L+P+YG GE+P
Sbjct: 9 GLDANTADFVGHAMALEINDSYKDQPFGQTVEKIKLYNESLSRYGKSPYLYPLYGLGEIP 68
Query: 274 QCFCRLCAVFGGVYCLNRPIDKV 296
Q F RL A++GG Y L++PI+ +
Sbjct: 69 QGFARLSAIYGGTYMLDKPIEAI 91
>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 34.7 bits (76), Expect = 0.18
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 17 TGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 50
T E I++ A S GK VLHMDS YGG AS
Sbjct: 15 TRRYECILSGALSVAGKKVLHMDSQKFYGGETAS 48
>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 31.9 bits (69), Expect = 1.3
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 353 GTIMASEKEPLTLLRFPPLADDDNAVTVLEVGPATGSCPKGLFVVYFITKKTKDAESDLK 412
G +M + R P L D + +V P +CP + VY + T + ++ L+
Sbjct: 230 GGVMMYVSHAMAYTRLPTLESSDTELLCTQVIPCKSNCPIIIAGVYRVPDSTAEMDAKLE 289
Query: 413 PYAERIF 419
E+I+
Sbjct: 290 GLIEKIY 296
>SB_35013| Best HMM Match : Exo_endo_phos (HMM E-Value=0.027)
Length = 381
Score = 31.9 bits (69), Expect = 1.3
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 353 GTIMASEKEPLTLLRFPPLADDDNAVTVLEVGPATGSCPKGLFVVYFITKKTKDAESDLK 412
G +M + R P L D + +V P +CP + VY + T + ++ L+
Sbjct: 35 GGVMMYVSHAMAYTRLPTLESSDTELLCTQVIPCKSNCPIIIAGVYRVPDSTAEMDAKLE 94
Query: 413 PYAERIF 419
E+I+
Sbjct: 95 GLIEKIY 101
>SB_12999| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-10)
Length = 734
Score = 31.9 bits (69), Expect = 1.3
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 353 GTIMASEKEPLTLLRFPPLADDDNAVTVLEVGPATGSCPKGLFVVYFITKKTKDAESDLK 412
G +M + R P L D + +V P +CP + VY + T + ++ L+
Sbjct: 451 GGVMMYVSHAMAYTRLPTLESSDTELLCTQVIPCKSNCPIIIAGVYRVPDSTAEMDAKLE 510
Query: 413 PYAERIF 419
E+I+
Sbjct: 511 GLIEKIY 517
>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 31.5 bits (68), Expect = 1.7
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 7 PTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQ 57
P + +V+G+G+ A+ ++ GK +L ++ D GG +++ +G +
Sbjct: 83 PDEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGGCCHTFHEKGFE 133
>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 31.5 bits (68), Expect = 1.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 10 FQVIVVGTGMVESIVAAACSRIGK-NVLHMDSSDHYGGLW 48
F V V+G G + + A C K +++ + SDH GGLW
Sbjct: 11 FDVAVIGAG-ISGLATAKCLLDDKFSIIVYEQSDHIGGLW 49
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 31.1 bits (67), Expect = 2.3
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 167 ADVFATEAVGIVEKRMLMKMLTSIVGYSEEEMNNEFK--DWNNKTLKEYLTHKGLTPNLI 224
+DV E I+E+ +K T + + E+++E++ D +N+ E G + +
Sbjct: 2571 SDVLCPEQASIIEE---LKKWTKNISNWDVEVSSEYQSQDESNEVFAECDMFAGFHEDTL 2627
Query: 225 HYILYAIAGGNNSLPCLEGVKECKKFLMSL 254
++ I+ NN LP E V+ CK LM +
Sbjct: 2628 PSLVLKISE-NNDLPREEIVRSCKNHLMDV 2656
>SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 30.7 bits (66), Expect = 3.0
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 128 GPLVELLISSNIARYAEFRCVTRVLT-WLNDQLMPVPCSRADVFATEAVGIV 178
GPL+ +++ + +A Y +FR V+ ++T W+ L+ +R V EA+G+V
Sbjct: 133 GPLLIVILYAILALYGQFRVVSWIITIWVLGSLIVFLLAR--VLGGEAIGVV 182
>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 30.7 bits (66), Expect = 3.0
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 52 NFEGLQKFIKEVNSDPDRQKQVYNLS-EKW--FIEKESAQGETTD 93
+ + LQK ++E+NSD +R K + +KW F+ ++ + G TTD
Sbjct: 251 HLQNLQKELQEINSDTERDKTAAEKAIKKWVDFLIEKYSTGGTTD 295
>SB_47851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 893
Score = 30.7 bits (66), Expect = 3.0
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 353 GTIMASEKEPLTLLRFPPLADDDNAVTVLEVGPATGSCPKGLFVVYFITKKTKDAESDLK 412
G +M + R P L D + +V P +CP + VY + T + ++ L+
Sbjct: 183 GGVMMYVSHAMAYTRLPTLESSDTELLCTQVIPCKSNCPIIIAGVYRVPDSTAEMDAKLE 242
Query: 413 PYAERIF 419
E+++
Sbjct: 243 GLIEKMY 249
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 30.3 bits (65), Expect = 4.0
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 269 SGELPQCFCRLCAVFGGVYCLN-RPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVH 327
+G+ FC++C+ +CL+ PID+ ++ D T V + K L CD G H
Sbjct: 828 AGKDKMFFCKVCSEPFHGFCLDEEPIDE-DSWCCDSCSTCVVCGQQDKLLMCDKCQRGYH 886
Query: 328 -EC--PEELMSSEPAESCDISKAVFV 350
+C P + SE +E +AV++
Sbjct: 887 VDCLGPSYPVVSEGSEDTWDPEAVWM 912
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect = 5.2
Identities = 19/82 (23%), Positives = 33/82 (40%)
Query: 378 VTVLEVGPATGSCPKGLFVVYFITKKTKDAESDLKPYAERIFDMSGGDQTAATDKPKCLW 437
+T LE G T +F + IT+ S + + R++D S D +
Sbjct: 1049 ITDLETGEVTPCLRSSIFRLKMITRDANTILSTGQDFLLRVYDKSREDDDENVQDTNVVQ 1108
Query: 438 SLFYNVKDTSSPVSSVVDNVHV 459
Y + D+ + ++ VD HV
Sbjct: 1109 YQEYKIADSITTMTPSVDKRHV 1130
>SB_4102| Best HMM Match : Geminin (HMM E-Value=3.6)
Length = 341
Score = 29.9 bits (64), Expect = 5.2
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 294 DKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEELMSSEPAESCDISK 346
D E + D ++ VT S KK N D V+G + PEE S A S + K
Sbjct: 280 DDEEPEGGDSMESAVTETSVEKKANPDTAVMGPEQKPEEEAKSAKARSAVLPK 332
>SB_31879| Best HMM Match : Exo_endo_phos (HMM E-Value=1.4)
Length = 200
Score = 29.5 bits (63), Expect = 6.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 367 RFPPLADDDNAVTVLEVGPATGSCPKGLFVVYFITKKTKDAESDLKPYAERIF 419
R P L D + +V P +CP + VY + T + ++ L+ E+I+
Sbjct: 5 RLPTLESSDTELLCTQVIPCKSNCPIIIAGVYRVPDSTAEMDATLEGLIEKIY 57
>SB_38561| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)
Length = 432
Score = 29.5 bits (63), Expect = 6.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 367 RFPPLADDDNAVTVLEVGPATGSCPKGLFVVYFITKKTKDAESDLKPYAERIF 419
R P L D + +V P +CP + VY + T + ++ L+ E+I+
Sbjct: 5 RLPTLESSDTELLCTQVIPCKSNCPIIIAGVYRVPDSTAEMDAKLEGLIEKIY 57
>SB_24253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 29.5 bits (63), Expect = 6.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 405 KDAESDLKPYAERIFDMSGGDQTAATDKPKCLWSLFYNVKDTSSPVS 451
KD +SD+ E F+ D A D+ KC F +VKD ++ +S
Sbjct: 91 KDLQSDIMDEQE-YFEKKAEDVGVAVDELKCALQRFAHVKDCNTTIS 136
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 29.1 bits (62), Expect = 9.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 269 SGELPQCFCRLCAVFGGVYCLN-RPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVH 327
+G+ FC++C+ +CL+ PID+ ++ D T V + K L CD G H
Sbjct: 169 AGKDKMFFCKVCSEPFHGFCLDEEPIDE-DSWCCDSCSTCVVCGQQDKLLMCDKCQRGYH 227
>SB_52435| Best HMM Match : RYDR_ITPR (HMM E-Value=1.4)
Length = 954
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 390 CPKGLFVVYFITKKTKDAESDLKPYAERIFDMSGGDQTAATDKPKCLWSLFYNVKDTSSP 449
C KG F V+ + + + + ++ G ++ TD LW +F N +
Sbjct: 441 CKKGGFKVHVRRVRHLRVQDGISAFLQKELGYPGMEEVFCTDSKVVLWYIFNNARRFHVF 500
Query: 450 VSSVVDNVHVCSGPD 464
V++ + + S P+
Sbjct: 501 VANRIQQIRDLSSPE 515
>SB_17759| Best HMM Match : adh_short (HMM E-Value=1.5)
Length = 779
Score = 29.1 bits (62), Expect = 9.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 297 ETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEELMSSEPAES 341
+T + G +VT + ++N DHL + + C E L S A+S
Sbjct: 597 DTSDLSLGGAMVTTAKTASEINADHLHLLIGICMESLCSPRAAQS 641
>SB_8021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.1 bits (62), Expect = 9.2
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 274 QC-FCRLCAVFGGVYCLNR-PIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVI 324
QC C C + G R P K+ TK +D+ V TI+ +K++ D V+
Sbjct: 13 QCECCSSCRIVQGHLIYRRVPCLKISTKIIDDNNHVPTIEFALRKMSDDATVV 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,200,651
Number of Sequences: 59808
Number of extensions: 842708
Number of successful extensions: 1724
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1700
Number of HSP's gapped (non-prelim): 29
length of query: 523
length of database: 16,821,457
effective HSP length: 85
effective length of query: 438
effective length of database: 11,737,777
effective search space: 5141146326
effective search space used: 5141146326
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -