Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001126-TA|BGIBMGA001126-PA|IPR002005|Rab GTPase
activator, IPR000632|Yeast Mrs6p protein
(523 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 264 1e-70
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 200 1e-51
Z99281-35|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 126 3e-29
Z99281-34|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 126 3e-29
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 126 3e-29
Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical pr... 33 0.37
AC024843-3|AAF60838.1| 110|Caenorhabditis elegans Hypothetical ... 33 0.65
Z48230-2|CAA88263.1| 515|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z48006-6|CAA88051.1| 515|Caenorhabditis elegans Hypothetical pr... 31 1.5
U53139-9|AAW88402.1| 379|Caenorhabditis elegans Serpentine rece... 31 1.5
U53139-8|AAK18938.3| 338|Caenorhabditis elegans Serpentine rece... 31 1.5
U23529-6|AAL32208.1| 384|Caenorhabditis elegans Hypothetical pr... 31 2.6
U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical pr... 30 4.6
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 264 bits (647), Expect = 1e-70
Identities = 166/523 (31%), Positives = 271/523 (51%), Gaps = 37/523 (7%)
Query: 2 MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNF----EGLQ 57
MDE P V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S+ E +
Sbjct: 1 MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHEVTE 60
Query: 58 KFIKEVNSDPDRQKQVYNLSEKWFIEK------ESAQGETTDENKGEPRKVWSQADFAAE 111
+K+++S + + IE E+ + K E + + +Q + A++
Sbjct: 61 NQVKKLDSSEISKLSELLTENEQLIELGNREIVENIEMTWIPRGKDEEKPMKTQLEEASQ 120
Query: 112 YRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQ-----LMPVPCSR 166
R+F+ID PK+L S+G +V+ L S ++ YAEF+ V R L L PVPCS+
Sbjct: 121 MRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSK 180
Query: 167 ADVFATEAVGIVEKRMLMKMLTSIVGYSE---EEMNNEFKDWNNKTLKEYLTHKGLTPNL 223
++F + A+ I+EKR LMK +T +S EE + ++ E+L G+ L
Sbjct: 181 GEIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTL 240
Query: 224 IHYILYAIAGGNNSLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVF 283
+I+ I + G+ +F+ S+G +G +PFL+P+YG GEL QCFCRL AVF
Sbjct: 241 QSFIINTIGILQQRPTAMTGMLASCQFMDSVGHFGPSPFLFPLYGCGELSQCFCRLAAVF 300
Query: 284 GGVYCLNRPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEELMSSEPAESCD 343
G +YCL RP+ + K +GK + + + ++NC ++V+ PE + +S +
Sbjct: 301 GSLYCLGRPVQAIVKK---DGK-ITAVIANGDRVNCRYIVMSPRFVPETVPAS---STLK 353
Query: 344 ISKAVFVTNGTIMASEKEPLTLLRFPPLADDDNAVTVLEVGPATGSCPKGLFVVYFITKK 403
I + V+ T+ +I +EKE LTLL L D ++EVG + PKG F+V+
Sbjct: 354 IERIVYATDKSIKEAEKEQLTLLNLASLRPDAAVSRLVEVGFEACTAPKGHFLVH--ATG 411
Query: 404 TKDAESDLKPYAERIFDMSGGDQTAATDKPKCLWSLFYNVKDTSSPVSSVVDNVHVCSGP 463
T++ E+ +K AE+IF+ ++ + W + + + +NV V
Sbjct: 412 TQEGETSVKTIAEKIFE---------KNEVEPYWKMSFTANSMKFDTAG-AENVVVAPPV 461
Query: 464 DAGLDFDRAVEQAEQIFKKICPGEEFLPRAPNPEEIVFEDDVT 506
DA L + VE+ Q+F P +FLPRA EE E+ T
Sbjct: 462 DANLHYASVVEECRQLFCTTWPELDFLPRAMKKEEEEEEEPET 504
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 200 bits (489), Expect = 1e-51
Identities = 113/336 (33%), Positives = 184/336 (54%), Gaps = 22/336 (6%)
Query: 2 MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNF----EGLQ 57
MDE P V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S+ E +
Sbjct: 1 MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHEVTE 60
Query: 58 KFIKEVNSDPDRQKQVYNLSEKWFIEK------ESAQGETTDENKGEPRKVWSQADFAAE 111
+K+++S + + IE E+ + K E + + +Q + A++
Sbjct: 61 NQVKKLDSSEISKLSELLTENEQLIELGNREIVENIEMTWIPRGKDEEKPMKTQLEEASQ 120
Query: 112 YRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQ-----LMPVPCSR 166
R+F+ID PK+L S+G +V+ L S ++ YAEF+ V R L L PVPCS+
Sbjct: 121 MRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSK 180
Query: 167 ADVFATEAVGIVEKRMLMKMLTSIVGYSE---EEMNNEFKDWNNKTLKEYLTHKGLTPNL 223
++F + A+ I+EKR LMK +T +S EE + ++ E+L G+ L
Sbjct: 181 GEIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTL 240
Query: 224 IHYILYAIAGGNNSLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVF 283
+I+ I + G+ +F+ S+G +G +PFL+P+YG GEL QCFCRL AVF
Sbjct: 241 QSFIINTIGILQQRPTAMTGMLASCQFMDSVGHFGPSPFLFPLYGCGELSQCFCRLAAVF 300
Query: 284 GGVYCLNRPIDKVETKTVDEGKTVVTIDSKSKKLNC 319
G +YCL RP+ + K +GK + + + ++NC
Sbjct: 301 GSLYCLGRPVQAIVKK---DGK-ITAVIANGDRVNC 332
>Z99281-35|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 126 bits (305), Expect = 3e-29
Identities = 65/200 (32%), Positives = 110/200 (55%), Gaps = 8/200 (4%)
Query: 113 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 172
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP + AT
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALAT 130
Query: 173 EAVGIVEKRMLMKMLTSIVGYSEEEMNN-EFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 231
+G+ EKR K L + + E + + + D +N T+++ GL N + +A+
Sbjct: 131 SLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDENTADFTGHAL 190
Query: 232 A----GGNNSLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVY 287
A + + P V++ + + SL RYG +P+L+P+YG GELPQ F RL A++GG Y
Sbjct: 191 ALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTY 250
Query: 288 CLNRPIDKVETKTVDEGKTV 307
L++P+D++ ++ GK +
Sbjct: 251 MLDKPVDEI---VMENGKAI 267
Score = 44.4 bits (100), Expect = 2e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 9 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 68
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 69 RQKQVYNLSEKWFIE 83
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
>Z99281-34|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 126 bits (305), Expect = 3e-29
Identities = 65/200 (32%), Positives = 110/200 (55%), Gaps = 8/200 (4%)
Query: 113 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 172
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP + AT
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALAT 130
Query: 173 EAVGIVEKRMLMKMLTSIVGYSEEEMNN-EFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 231
+G+ EKR K L + + E + + + D +N T+++ GL N + +A+
Sbjct: 131 SLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDENTADFTGHAL 190
Query: 232 A----GGNNSLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVY 287
A + + P V++ + + SL RYG +P+L+P+YG GELPQ F RL A++GG Y
Sbjct: 191 ALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTY 250
Query: 288 CLNRPIDKVETKTVDEGKTV 307
L++P+D++ ++ GK +
Sbjct: 251 MLDKPVDEI---VMENGKAI 267
Score = 44.4 bits (100), Expect = 2e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 9 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 68
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 69 RQKQVYNLSEKWFIE 83
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 126 bits (305), Expect = 3e-29
Identities = 65/200 (32%), Positives = 110/200 (55%), Gaps = 8/200 (4%)
Query: 113 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 172
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP + AT
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALAT 130
Query: 173 EAVGIVEKRMLMKMLTSIVGYSEEEMNN-EFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 231
+G+ EKR K L + + E + + + D +N T+++ GL N + +A+
Sbjct: 131 SLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDENTADFTGHAL 190
Query: 232 A----GGNNSLPCLEGVKECKKFLMSLGRYGNTPFLWPMYGSGELPQCFCRLCAVFGGVY 287
A + + P V++ + + SL RYG +P+L+P+YG GELPQ F RL A++GG Y
Sbjct: 191 ALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTY 250
Query: 288 CLNRPIDKVETKTVDEGKTV 307
L++P+D++ ++ GK +
Sbjct: 251 MLDKPVDEI---VMENGKAI 267
Score = 44.4 bits (100), Expect = 2e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 9 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 68
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 69 RQKQVYNLSEKWFIE 83
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
>Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical
protein F52H3.2 protein.
Length = 638
Score = 33.5 bits (73), Expect = 0.37
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 6 FPTDFQVIVVGTGMVESIVAAACSRIGKN-VLHMDSSDHYGGLWASYNFEGLQK--FIKE 62
F TD VIV+G G AAA +R G N VL + + G + + +F G+ K I+E
Sbjct: 13 FQTDVDVIVIGGGHAGCESAAAAARCGSNTVLVTQNKNTIGEMSCNPSFGGIGKGHLIRE 72
Query: 63 VNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGE-PRKVWSQADFAAEYRKFNIDTTP 121
V++ ++ + S + AQG + + RK++ + I++T
Sbjct: 73 VDALDGLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYK------TQMQNEINSTK 126
Query: 122 KLLFSRGPLVELLISS 137
+L G + ELL+ +
Sbjct: 127 RLEILEGEVAELLVEN 142
>AC024843-3|AAF60838.1| 110|Caenorhabditis elegans Hypothetical
protein Y61A9LA.7 protein.
Length = 110
Score = 32.7 bits (71), Expect = 0.65
Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 54 EGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQAD-FAAEY 112
E + +++ ++ S PDR +++ +++ ++ + + +K EP+KV+ D F ++Y
Sbjct: 35 ESMDEYLAQILS-PDRLQELKTAHDEFEAQRRGKRAAISASDKPEPKKVFDIIDQFTSDY 93
Query: 113 RKF 115
+KF
Sbjct: 94 QKF 96
>Z48230-2|CAA88263.1| 515|Caenorhabditis elegans Hypothetical
protein F19C6.4 protein.
Length = 515
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 119 TTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCS---RADVFATEAV 175
TT +++ P L++SN+ A +C R + L D P S DV + V
Sbjct: 330 TTHEIMHRVYPYGNFLMNSNVTT-AALQCARREVQMLGDTDAVKPISGWFNKDVAHEDVV 388
Query: 176 GIVEKRMLMKMLT 188
I+ RM+MKM T
Sbjct: 389 NIMAMRMIMKMAT 401
>Z48006-6|CAA88051.1| 515|Caenorhabditis elegans Hypothetical
protein F19C6.4 protein.
Length = 515
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 119 TTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCS---RADVFATEAV 175
TT +++ P L++SN+ A +C R + L D P S DV + V
Sbjct: 330 TTHEIMHRVYPYGNFLMNSNVTT-AALQCARREVQMLGDTDAVKPISGWFNKDVAHEDVV 388
Query: 176 GIVEKRMLMKMLT 188
I+ RM+MKM T
Sbjct: 389 NIMAMRMIMKMAT 401
>U53139-9|AAW88402.1| 379|Caenorhabditis elegans Serpentine
receptor, class w protein68, isoform b protein.
Length = 379
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 218 GLTPNLIH-YILYAIAGGNNSLPCLE-GVKECKKFLMSLGRYGNTPFL 263
G+ N+ H +IL + NNS+ + G+ C LMSLG YG+ FL
Sbjct: 45 GVVVNIFHLFILTRKSMVNNSIHVMMIGISVCDLLLMSLGVYGHFDFL 92
>U53139-8|AAK18938.3| 338|Caenorhabditis elegans Serpentine
receptor, class w protein68, isoform a protein.
Length = 338
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 218 GLTPNLIH-YILYAIAGGNNSLPCLE-GVKECKKFLMSLGRYGNTPFL 263
G+ N+ H +IL + NNS+ + G+ C LMSLG YG+ FL
Sbjct: 45 GVVVNIFHLFILTRKSMVNNSIHVMMIGISVCDLLLMSLGVYGHFDFL 92
>U23529-6|AAL32208.1| 384|Caenorhabditis elegans Hypothetical
protein C15B12.1 protein.
Length = 384
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 8 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMD 39
TD+ V+VVG G+ S A C +IG L ++
Sbjct: 3 TDYDVVVVGAGIFGSCTAYNCQKIGLKTLLLE 34
>U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical
protein C15B12.8 protein.
Length = 385
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 10 FQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 68
+ VIVVG G+ S A C R+G L + + Y ++ + G + I+ ++DP+
Sbjct: 6 YDVIVVGAGIFGSCTAYHCQRLGLRTLLL---EQYSLGHSNGSSHGKSRIIRYAHTDPE 61
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,479
Number of Sequences: 27539
Number of extensions: 655175
Number of successful extensions: 1589
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 16
length of query: 523
length of database: 12,573,161
effective HSP length: 85
effective length of query: 438
effective length of database: 10,232,346
effective search space: 4481767548
effective search space used: 4481767548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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