Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001126-TA|BGIBMGA001126-PA|IPR002005|Rab GTPase
activator, IPR000632|Yeast Mrs6p protein
         (523 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   2.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   8.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 485 PGEEFLP-RAPNPEEIVFEDDVTHGPEFQR 513
           P E+++P   PN E+ +FE+ V  G  F +
Sbjct: 149 PKEQYIPPELPNDEKSLFENGVEIGINFDK 178


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 231 IAGGNNSLPCLEGVKECKKFLMSLGRYGNTPFLW 264
           +A  N++L  + G+K  K+   ++    N  ++W
Sbjct: 341 VAKNNDTLQFISGIKIIKQISSNIYERQNNEYIW 374


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,806
Number of Sequences: 429
Number of extensions: 7578
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 523
length of database: 140,377
effective HSP length: 61
effective length of query: 462
effective length of database: 114,208
effective search space: 52764096
effective search space used: 52764096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)