Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001126-TA|BGIBMGA001126-PA|IPR002005|Rab GTPase
activator, IPR000632|Yeast Mrs6p protein
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 144 1e-34
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 129 5e-30
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 127 2e-29
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 126 4e-29
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 119 7e-27
09_06_0256 + 21887666-21888670 31 3.0
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 30 3.9
03_06_0628 - 35179951-35180265,35180653-35180889,35180982-351811... 30 5.2
03_05_0980 - 29384046-29384117,29384901-29384998,29385656-293857... 30 5.2
01_03_0233 + 14042548-14044950 30 5.2
03_02_0127 + 5777564-5779879 29 9.1
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 144 bits (350), Expect = 1e-34
Identities = 142/526 (26%), Positives = 230/526 (43%), Gaps = 70/526 (13%)
Query: 7 PTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSD 66
PT F V++ GTG+ ES++AAAC+ GK VLH+D + YG L++S L F+ SD
Sbjct: 21 PTSFDVVLCGTGLPESVLAAACAAAGKTVLHVDPNPFYGSLFSSLPLPSLPSFLSPSPSD 80
Query: 67 PDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNIDTT-PKLLF 125
+ + + + S E E G R+F D P+LL+
Sbjct: 81 DPAPSPSPSSAAAVDLRRRSPYSEV--ETSGA---------VPEPSRRFTADLVGPRLLY 129
Query: 126 SRGPLVELLISSNIARYAEFRCVT--RVLTWLNDQLMPVPCSRADVFATEAVGIVEKRML 183
V+LL+ S + + EF+ V +L W D L PVP SR +F + + EK +L
Sbjct: 130 CADEAVDLLLRSGGSHHVEFKSVEGGTLLYWDGD-LYPVPDSRQAIFKDTTLQLREKNLL 188
Query: 184 MKMLTSIVGY-----------SEEEMNNEFKDWN-NKTLKEYLTHKGLTPNLIHYILYAI 231
+ + + E E + D + + E+L + L+P + +LYAI
Sbjct: 189 FRFFKLVQAHIAASAAGAAAAGEGEASGRLPDEDLDLPFVEFLKRQNLSPKMRAVVLYAI 248
Query: 232 A------GGNNS----LPCLEGVKECKKFLMSLGRYGNT--PFLWPMYGSGELPQCFCRL 279
A G S L EGVK + S+GR+ N F++PMYG GELPQ FCR
Sbjct: 249 AMADYDQDGVESCERLLTTREGVKTIALYSSSIGRFANAEGAFIYPMYGHGELPQAFCRC 308
Query: 280 CAVFGGVYCLNRPIDKVETKTVDEGKTVVTID-SKSKKLNCDHLVIG-VHECPE-ELMSS 336
AV G +Y L P + +E K V I + + + C L++ +E P ++ S
Sbjct: 309 AAVKGALYVLRMPATALLVD--EEKKRYVGIRLASGQDILCQQLILDPSYEIPSLDMPSD 366
Query: 337 EPAESC--DISKAVFVTNGTIMASEKEPLTLLRFPPLADDD---NAVTVLEVGPATGSCP 391
P + +++ + + + ++ L + FPP + ++ AV VL++ CP
Sbjct: 367 APVSNLPRKVARGICIISSSVRQDTSNVLVV--FPPKSLEEEQITAVRVLQLSSNLAVCP 424
Query: 392 KGLFVVYFITKKTKDAESDLKPYAERIFDM--------------SGGDQTAATDKPKCLW 437
G+F+ Y T T DA + K ++ I + ++ + KP LW
Sbjct: 425 PGMFMAYLSTPCT-DAFTGKKCISKAIDALFSTKVSNDLEDHLEKNSEENKESVKPTLLW 483
Query: 438 SLFYNVKDTSSPVSSVVDNVHVCSGPDAGLDFDRAVEQAEQIFKKI 483
S Y V++ S + C PD +D+ +E + + +I
Sbjct: 484 SCVY-VQEIIQGTSGTALS---CPIPDENMDYRSILESTKMPWCRI 525
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 129 bits (312), Expect = 5e-30
Identities = 104/408 (25%), Positives = 188/408 (46%), Gaps = 36/408 (8%)
Query: 89 GETTDENKGEPRKVWSQADFAAEY----RKFNIDTTPKLLFSRGPLVELLISSNIARYAE 144
GE+T N + K + + A E+ +++N+D PK + + G LV +LI +++ +Y
Sbjct: 41 GESTSLNLTKLWKRFKGNETAPEHLGVSKEYNVDMVPKFMMANGALVRVLIHTSVTKYLN 100
Query: 145 FRCVTRVLTWLNDQLMPVPCSRADVFATEAVGIVEKRMLMKMLTSIVGYSEEE-MNNEFK 203
F+ V + N ++ VP + + + +G+ EKR K + Y E++ ++E
Sbjct: 101 FKAVDGSFVYNNGKIHKVPATDVEALKSNLMGLFEKRRARKFFIYVQDYEEDDPKSHEGL 160
Query: 204 DWNNKTLKEYLTHKGLTPNLIHYILYAIA--GGNNSL--PCLEGVKECKKFLMSLGRY-G 258
D + T +E ++ GL + + +I +A+A +N L P ++ VK K + SL R+ G
Sbjct: 161 DLHKVTTREVISKYGLEDDTVDFIGHALALHRDDNYLDEPAIDTVKRMKLYAESLARFQG 220
Query: 259 NTPFLWPMYGSGELPQCFCRLCAVFGGVYCLNRPIDKVETKTVDEGKTVVTIDSKSKKLN 318
+P+++P+YG ELPQ F RL AV+GG Y LN+ KVE DE + S+ +
Sbjct: 221 GSPYIYPLYGLAELPQAFARLSAVYGGTYMLNKAECKVE---FDENGKAYGVTSEGETAK 277
Query: 319 CDHLVIGVHECPEELMSSEPAESCDISKAVFVTNGTIMASEKEPLTLLRFP-PLADDDNA 377
C +V C + + + +++A+ + I ++ + P +
Sbjct: 278 CKKVV-----CDPSYLPDKVKKVGRVARAICIMKHPIPDTKDSHSVQIILPKKQLKRKSD 332
Query: 378 VTVLEVGPATGSCPKGLFVVYFITKKTKD-AESDLKPYAERIFDMSGGDQTAATDKPKCL 436
+ V A PKG F+ + T+ D E +LKP G D ++
Sbjct: 333 MYVFCCSYAHNVAPKGKFIAFVSTEAEADKPEIELKP---------GIDLLGPVEE---- 379
Query: 437 WSLFYNVKDTSSPVSSV-VDNVHVCSGPDAGLDFDRAVEQAEQIFKKI 483
F+++ D P ++ DN V + DA F+ V+ ++ KI
Sbjct: 380 --TFFDIYDRYEPTNTADEDNCFVTNSYDATTHFETTVKDVLALYSKI 425
Score = 49.6 bits (113), Expect = 6e-06
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 9 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 68
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K K + P+
Sbjct: 4 EYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESTSLNLTKLWKRFKGNETAPE 63
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 127 bits (307), Expect = 2e-29
Identities = 98/380 (25%), Positives = 175/380 (46%), Gaps = 32/380 (8%)
Query: 113 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 172
R +N+D PK + + G LV LI +++ +Y F+ V + ++ VP + + +
Sbjct: 69 RDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPATDMEALKS 128
Query: 173 EAVGIVEKRMLMKMLTSIVGYSEEE-MNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 231
+G+ EKR + Y E + ++ D T +E + GL+ + + +I +A+
Sbjct: 129 PLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGLSDDTVDFIGHAL 188
Query: 232 AGGNNSL----PCLEGVKECKKFLMSLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGV 286
A + P ++ VK K + SL R+ G +P+++P+YG GELPQ F RL AV+GG
Sbjct: 189 ALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGT 248
Query: 287 YCLNRPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEELMSSEPAESCDISK 346
Y LN+P KVE EGK V + S+ + C +V C + ++ + +++
Sbjct: 249 YMLNKPDCKVEFDM--EGK-VCGVTSEGETAKCKKVV-----CDPSYLPNKVRKIGKVAR 300
Query: 347 AVFVTNGTIM-ASEKEPLTLLRFPPLADDDNAVTVLEVGPATGSCPKGLFVVYFITK-KT 404
A+ + + I ++ + ++ + + V PKG F+ + T+ +T
Sbjct: 301 AIAIMSHPIANTNDSHSVQIILPQKQLGRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAET 360
Query: 405 KDAESDLKPYAERIFDMSGGDQTAATDKPKCLWSLFYNVKDTSSPVSS-VVDNVHVCSGP 463
ES+LKP G D D+ LF+++ D PV+ +DN V +
Sbjct: 361 DHPESELKP---------GIDLLGQVDE------LFFDIYDRYEPVNEPSLDNCFVSTSY 405
Query: 464 DAGLDFDRAVEQAEQIFKKI 483
DA F+ V ++ I
Sbjct: 406 DATTHFETTVTDVLNMYTLI 425
Score = 47.6 bits (108), Expect = 2e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 9 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 67
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K + + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDKPP 62
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 126 bits (304), Expect = 4e-29
Identities = 97/380 (25%), Positives = 176/380 (46%), Gaps = 32/380 (8%)
Query: 113 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 172
+ +N+D PK + + G LV LI +++ +Y F+ V + ++ VP + + +
Sbjct: 69 KDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPATDMEALKS 128
Query: 173 EAVGIVEKRMLMKMLTSIVGYSEEE-MNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 231
+G+ EKR + Y+E + ++ D T +E + GL+ + + +I +A+
Sbjct: 129 PLMGLFEKRRARNFFIYVQDYNEADPKTHQGLDLTTMTTRELIAKYGLSDDTVDFIGHAL 188
Query: 232 AGGNNSL----PCLEGVKECKKFLMSLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGV 286
A + P ++ VK K + SL R+ G +P+++P+YG GELPQ F RL AV+GG
Sbjct: 189 ALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGT 248
Query: 287 YCLNRPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEELMSSEPAESCDISK 346
Y LN+P KVE EGK V + S+ + C +V C + ++ + +++
Sbjct: 249 YMLNKPDCKVEFDM--EGK-VCGVTSEGETAKCKKVV-----CDPSYLPNKVRKIGKVAR 300
Query: 347 AVFVTNGTIMASEKEPLTLLRFP-PLADDDNAVTVLEVGPATGSCPKGLFVVYFITK-KT 404
A+ + + I ++ + P + + V PKG F+ + T+ +T
Sbjct: 301 AIAIMSHPIASTNDSHSVQIILPQKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSTEAET 360
Query: 405 KDAESDLKPYAERIFDMSGGDQTAATDKPKCLWSLFYNVKDTSSPVSS-VVDNVHVCSGP 463
+ +S+LKP G D D+ LF+++ D PV+ +DN V +
Sbjct: 361 DNPQSELKP---------GIDLLGQVDE------LFFDIYDRYEPVNEPSLDNCFVSTSY 405
Query: 464 DAGLDFDRAVEQAEQIFKKI 483
DA F+ V ++ I
Sbjct: 406 DATTHFETTVTDVLNMYTLI 425
Score = 47.6 bits (108), Expect = 2e-05
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 9 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 67
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K + + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDKPP 62
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 119 bits (286), Expect = 7e-27
Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 6/223 (2%)
Query: 113 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 172
R +N+D PK + + G LV +LI + + +Y F+ V + ++ VP + + +
Sbjct: 69 RDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPSTDMEALKS 128
Query: 173 EAVGIVEKRMLMKMLTSIVGYSEEEMN-NEFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 231
+G+ EKR K + Y E + + ++ D N T KE ++ GL N I +I +A+
Sbjct: 129 PLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNTIDFIGHAV 188
Query: 232 AGGNNSLPCLEGVKECKKFLMSLGRY-GNTPFLWPMYGSGELPQCFCRLCAVFGGVYCLN 290
A E + + S+GR+ G +P+++P+YG GELPQ F RL AV+GG Y LN
Sbjct: 189 ALHKEDNYLTEPAIDTL-YAESVGRFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLN 247
Query: 291 RPIDKVETKTVDEGKTVVTIDSKSKKLNCDHLVIGVHECPEEL 333
+P K+E DEGK V + S+ + C +V P+++
Sbjct: 248 KPECKIEFN--DEGK-VCGVTSEGETAKCKKVVCDPSYIPDKV 287
Score = 45.6 bits (103), Expect = 1e-04
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 9 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDP 67
++ VIV+GTG+ E I++ S VLHMD +D+YGG S N L K K + P
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGTPP 62
>09_06_0256 + 21887666-21888670
Length = 334
Score = 30.7 bits (66), Expect = 3.0
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 2 MDEDFPTDFQVIVVGTGMVESIVAA-ACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFI 60
+D DF + Q+ G G + +V+A A I + + +++S H G A + I
Sbjct: 161 VDADFVS--QLADAGPGALSELVSAYANGSIQEKLDKVENSGHVEGRAAESDVNVSSPRI 218
Query: 61 KEVNSDPDRQKQVYNLSEK 79
KE N D + +V+++S+K
Sbjct: 219 KEANEDAEEVDKVWDMSKK 237
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 30.3 bits (65), Expect = 3.9
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 196 EEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAIAG 233
EE NE KDWN +K++ K L P L+ +++ ++ G
Sbjct: 659 EENQNEQKDWNKGGIKKHFISK-LPPVLVIHLMRSLLG 695
>03_06_0628 -
35179951-35180265,35180653-35180889,35180982-35181140,
35181673-35181864,35182696-35182983,35183289-35183342,
35183561-35183671,35183780-35184011,35184097-35184302
Length = 597
Score = 29.9 bits (64), Expect = 5.2
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 12 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEG 55
V+V+G+G+ A +R ++VL ++S D GG S++ +G
Sbjct: 78 VVVIGSGIGGLCCAGLLARYNQDVLVLESHDRPGGAAHSFDIKG 121
>03_05_0980 -
29384046-29384117,29384901-29384998,29385656-29385725,
29386260-29386391,29386823-29387083,29387266-29387336,
29387520-29387587,29388676-29388869
Length = 321
Score = 29.9 bits (64), Expect = 5.2
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 12 VIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPDRQK 71
V V+GT + E +++ R + + GGL A Y L K E++S + +K
Sbjct: 101 VDVMGTRLAEEVLSLVQRRPELQKISFVAHS-LGGLIARYAIALLYKSATEIDSHEEHEK 159
Query: 72 QVYNLSEKWFIEKESAQG 89
Q+ ++S I++ G
Sbjct: 160 QITDVSSNQLIDRGKIAG 177
>01_03_0233 + 14042548-14044950
Length = 800
Score = 29.9 bits (64), Expect = 5.2
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 180 KRMLMKMLTSIVGYSEEEMNNEFKDW 205
+RML+ ++ ++ ++E E++ EF DW
Sbjct: 185 RRMLLSLVPAVRAHAEREISREFSDW 210
>03_02_0127 + 5777564-5779879
Length = 771
Score = 29.1 bits (62), Expect = 9.1
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 56 LQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKF 115
LQ+ +E++ D ++ + LSE E +G T ++N + K Q +
Sbjct: 562 LQQSPEELSEDEFYEEYDFELSELDESGTED-EGPTINKNSYDHLKADGQRPKRISALEQ 620
Query: 116 NIDT-TP-KLLFSRGPLVELLISSNIARYAEFR 146
+ D+ TP KL F RG +VEL SN R +FR
Sbjct: 621 DDDSATPYKLKFKRGKIVELQPDSNGPRKLKFR 653
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,767,362
Number of Sequences: 37544
Number of extensions: 744974
Number of successful extensions: 1690
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 16
length of query: 523
length of database: 14,793,348
effective HSP length: 85
effective length of query: 438
effective length of database: 11,602,108
effective search space: 5081723304
effective search space used: 5081723304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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