Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001125-TA|BGIBMGA001125-PA|undefined
         (296 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.091
SB_27921| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 30   2.0  
SB_40378| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_51623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 34.7 bits (76), Expect = 0.091
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 193 GSSVVCALQERRLSPCPSERLAPLASVGSVGPSYAVECEIASVGADSVFAEDEPDSTDGE 252
           GSS     ++  L     + + P + + S  PS   + +  ++  + V + ++ DSTDG+
Sbjct: 228 GSSQSAGARDIVLHEDYDDEVNPRSEISS--PSQKTQAQTGAISPEEVSSLEDDDSTDGD 285

Query: 253 VEQFSTDSGGGEAA 266
            +  S  SG G AA
Sbjct: 286 AKPNSVTSGSGHAA 299


>SB_27921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 220 GSVGPSY---AVECEIASVGADSVFAEDEPDSTDGEVEQFSTDSGGGEAAAVGECTELAS 276
           G++GPS+    + C I  V   +  +   PD+TDG+   F  + G  +      C+  A 
Sbjct: 142 GTLGPSWDHGLISCRIVKVIPGAKCSNVVPDNTDGDACGFMLNRGSNKCTFWETCS-TAH 200

Query: 277 RPVHVP 282
            P+H P
Sbjct: 201 WPIHDP 206


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 9/63 (14%)

Query: 192 RGSSVVCA--LQERRLSPCPSERLAPLASVGSVGPSYAVECEIASVGADSV-FAEDEPDS 248
           R S   CA  L+ER  SPCPS+     A +G++  SY VE    SV    V F  D P S
Sbjct: 193 RASWQACAPGLRERLGSPCPSQ-----AQIGTIS-SYLVERHSFSVSCKVVAFTGDNPAS 246

Query: 249 TDG 251
             G
Sbjct: 247 LAG 249


>SB_40378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 228 VECEIASVGADSVFAEDEPDSTDGEVEQFSTDSGGGEAAAVGECTELASRPV 279
           V+ E+  + +   F  D+    + E E  +T +   + + V E T  ASRPV
Sbjct: 11  VDSEVGGISSGEEFELDQEMEVESEAES-NTRTSSSDESVVEEATSSASRPV 61


>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 207 PCPSERLAPLASVGSVGPSY-AVECEIASVGADSVFAEDEPDSTDGEVE----QFSTDSG 261
           P P   L P A +GS GPS  + +   +S G +S+ A     ++   V      F   S 
Sbjct: 417 PPPPYSLTPGAPLGSQGPSISSQQSATSSTGFESLLAMSNQSTSAAAVSLPATTFPVAST 476

Query: 262 GGEAAAVGECTELASRPV 279
           G  +AA G     +S+PV
Sbjct: 477 GSMSAAAGVGFGTSSQPV 494


>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 7   WNGRDTNSAENSTENSHATERDRV 30
           W G DTN A+N+ E    T+R  V
Sbjct: 976 WTGSDTNPADNAGEGKAGTDRHNV 999


>SB_51623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 231 EIASVGADSVFAEDE-PDSTDGEVEQFSTDSGGG 263
           ++A+VG D   A+DE  D TDG  +    D  GG
Sbjct: 386 DVATVGGDGSEADDEDDDGTDGRGDDGDDDDKGG 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,931,763
Number of Sequences: 59808
Number of extensions: 276986
Number of successful extensions: 685
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 8
length of query: 296
length of database: 16,821,457
effective HSP length: 82
effective length of query: 214
effective length of database: 11,917,201
effective search space: 2550281014
effective search space used: 2550281014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)