GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001125-TA|BGIBMGA001125-PA|undefined
         (296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    28   1.4  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.2  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 238 DSVFAEDEPDSTDGEVEQFSTDSGGGEAAAVGECTELASR 277
           DS    D  D++D +VE+++ D  GG + A    +   SR
Sbjct: 217 DSSSMSDSRDASDNDVEEYNEDGDGGSSDAATANSTRGSR 256


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 8   NGRDTNSAENSTENSHATERD 28
           N RD NSA+    NSH  E D
Sbjct: 139 NNRDENSAKREKNNSHQVEAD 159


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,011,213
Number of Sequences: 5004
Number of extensions: 32792
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 2
length of query: 296
length of database: 2,362,478
effective HSP length: 72
effective length of query: 224
effective length of database: 2,002,190
effective search space: 448490560
effective search space used: 448490560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)