Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001125-TA|BGIBMGA001125-PA|undefined
(296 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 31 1.1
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 31 1.5
04_03_0919 + 20820010-20821707 29 4.5
11_01_0109 - 843748-843851,844655-844940,845390-845557,845812-84... 29 5.9
09_01_0057 - 916973-917287,917371-917495,917587-918241 29 5.9
08_02_1197 + 25199614-25199795,25200241-25200308,25200309-252004... 29 5.9
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748... 29 5.9
03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217... 29 5.9
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341... 29 5.9
11_05_0027 - 18466042-18466431,18466669-18466739,18467105-18467351 28 7.8
01_05_0760 - 24977608-24978708 28 7.8
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 203 RRLSPCPSERLAPLASVGSVGPSYAVECEIASV--GADSVFAE 243
+ L P +RL+ SV +GP +AV + ASV GA + FAE
Sbjct: 577 KHLGVHPGDRLSSSCSVDVIGPGFAVTEDDASVGDGAHATFAE 619
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 220 GSVGPSYAVECEIASVGADSVFAEDEPDSTDGEVEQFSTDSG 261
G+ G S+AV+ ++ G D++ + P+ D +E++ +G
Sbjct: 64 GATGASFAVKYQLPDEGLDALISVSSPEDLDNMIEEYDKLAG 105
>04_03_0919 + 20820010-20821707
Length = 565
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 43 GVRIAATLGGFFALMVFLIVYKSRSK 68
GV I A++G F +++ LIV+KS+ K
Sbjct: 219 GVAIGASIGVLFLMILLLIVWKSKGK 244
>11_01_0109 -
843748-843851,844655-844940,845390-845557,845812-846006,
846195-846320,846427-846589,847363-847388
Length = 355
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 188 YLERRGSSVVCALQERRLSPCPSERLAPLASVGSVGPSYAVECEI 232
Y E V L LSP PS +P+ S V Y + CEI
Sbjct: 290 YSEDMFPVVEAYLDREELSPVPSRPESPILSSCEVREEYQIRCEI 334
>09_01_0057 - 916973-917287,917371-917495,917587-918241
Length = 364
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 214 APLASVGSVGPSYAVECEIASVGADSVFAEDEP 246
AP + G +G S C+ +S DS+FA EP
Sbjct: 299 APASPSGVIGASACFSCDSSSSSVDSLFAALEP 331
>08_02_1197 +
25199614-25199795,25200241-25200308,25200309-25200400,
25200940-25201019,25201418-25201535,25202371-25202562
Length = 243
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 235 VGADSVFAEDEPDSTDGEVEQFSTDSGGGEAAAVGE 270
V D ++DE D DGE ++G E AV E
Sbjct: 183 VDGDDDSSDDEDDDDDGEPSMMDNEAGSAEKMAVDE 218
>05_04_0367 -
20672776-20673550,20674097-20674320,20674626-20674843,
20675133-20676534
Length = 872
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 229 ECEIASVGADSVFAEDEPDSTDGEVEQFSTDSGGGEAAA 267
ECEI SVG+ SV E E + ++G G A A
Sbjct: 352 ECEIESVGSASVLDSGEESVCSCECDHADGNAGAGAATA 390
>03_02_0737 +
10820728-10821096,10821320-10821532,10821631-10821732,
10821755-10821793,10821830-10821967,10822182-10822486,
10822784-10822937,10823279-10823404
Length = 481
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 212 RLAPLASVGSVGPSYAVECEIASVGADSVFAEDEPDSTDGEVEQFSTDSGGGEAAAVGEC 271
R++P S S+A + +G S + + +D +E+F + GG+ A C
Sbjct: 313 RISPFDSGKRRHTSFAAVAVVPILGDGSTRYQIK--DSDLRIERFRSGGPGGQHA---NC 367
Query: 272 TELASRPVHVP 282
TE A R VH+P
Sbjct: 368 TESAVRIVHIP 378
>02_05_0964 -
33133516-33133689,33133780-33133857,33133997-33134152,
33134685-33134864,33135516-33135695
Length = 255
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 199 ALQERRLSPCPSERLAPLASVGSVGPSYAVECEIASVGADSVFAEDEPDSTDGEVEQFST 258
A++ R +P PS L A+ SV P Y +A + E +T G + +
Sbjct: 34 AVRVLRQAPRPSRGLVVRAAAASVAPKYTTLKPLADRVLVKI-KSAEQKTTGGILLPSAA 92
Query: 259 DS--GGGEAAAVGECTELASRPVHVPLRL 285
S GGE A+GE + V V +++
Sbjct: 93 QSKPQGGEVVAIGEGRTVGDNKVEVSIQV 121
>11_05_0027 - 18466042-18466431,18466669-18466739,18467105-18467351
Length = 235
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 230 CEIASVGADSVFAEDEPDSTDGEVEQFSTDSGGGEAAAVGECTE 273
CE+A V ++ E+E D E E+ +T G E + GE T+
Sbjct: 24 CEVARVWEEASAGEEEDDGDAEEAERSATGRSGAE-SGWGEATK 66
>01_05_0760 - 24977608-24978708
Length = 366
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 236 GADSVFAEDEPDSTDGEVEQFSTDSGGGEAA 266
GA ++ TD E+ FSTD GGE A
Sbjct: 172 GAPGQYSSSSSTVTDDELAPFSTDEEGGEEA 202
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,403,751
Number of Sequences: 37544
Number of extensions: 279212
Number of successful extensions: 844
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 11
length of query: 296
length of database: 14,793,348
effective HSP length: 82
effective length of query: 214
effective length of database: 11,714,740
effective search space: 2506954360
effective search space used: 2506954360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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