GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001125-TA|BGIBMGA001125-PA|undefined
         (296 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126307-1|AAI26308.1|  986|Homo sapiens MYOCD protein protein.        33   1.6  
AY764180-1|AAV33439.1|  986|Homo sapiens myocardin protein.            33   1.6  
AK097821-1|BAC05177.1|  684|Homo sapiens protein ( Homo sapiens ...    31   3.7  

>BC126307-1|AAI26308.1|  986|Homo sapiens MYOCD protein protein.
          Length = 986

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 206 SPCPSERLAPLASVGSVGPSYAVECEIASVGADSVFAEDEPDSTDGEVEQFSTDS 260
           SPC  +++A L S   VGP +++     S  + ++    +P S +  V+Q  T S
Sbjct: 728 SPCVQQKMAGLHSSDKVGPKFSIPSPTFSKSSSAISEVTQPPSYEDAVKQQMTRS 782


>AY764180-1|AAV33439.1|  986|Homo sapiens myocardin protein.
          Length = 986

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 206 SPCPSERLAPLASVGSVGPSYAVECEIASVGADSVFAEDEPDSTDGEVEQFSTDS 260
           SPC  +++A L S   VGP +++     S  + ++    +P S +  V+Q  T S
Sbjct: 728 SPCVQQKMAGLHSSDKVGPKFSIPSPTFSKSSSAISEVTQPPSYEDAVKQQMTRS 782


>AK097821-1|BAC05177.1|  684|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40502 fis, clone TESTI2045199. ).
          Length = 684

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 206 SPCPSERLAPLASVGSVGPSYAVECEIASVGADSVFAEDEPDSTDGEVEQ 255
           SPC  +++A L S   VGP +++     S  + ++    +P S +  V+Q
Sbjct: 632 SPCVQQKMAGLHSSDKVGPKFSIPSPTFSKSSSAISEVTQPPSYEDAVKQ 681


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,045,783
Number of Sequences: 224733
Number of extensions: 1230456
Number of successful extensions: 5653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5647
Number of HSP's gapped (non-prelim): 6
length of query: 296
length of database: 73,234,838
effective HSP length: 89
effective length of query: 207
effective length of database: 53,233,601
effective search space: 11019355407
effective search space used: 11019355407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)