GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001125-TA|BGIBMGA001125-PA|undefined
         (296 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-735|AAF51016.1| 1026|Drosophila melanogaster CG15431-PA...    90   3e-18
BT023722-1|AAY85122.1|  424|Drosophila melanogaster AT10622p pro...    32   1.1  
AE014297-332|AAF51969.1|  424|Drosophila melanogaster CG2104-PA ...    32   1.1  
M38643-1|AAA28939.1|  549|Drosophila melanogaster protein ( D.me...    29   5.8  
M22874-1|AAA28674.1|  583|Drosophila melanogaster nucleic acid-b...    29   5.8  
AE014296-669|AAF47779.2|  942|Drosophila melanogaster CG14973-PA...    29   7.7  

>AE014134-735|AAF51016.1| 1026|Drosophila melanogaster CG15431-PA
           protein.
          Length = 1026

 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 46/65 (70%), Positives = 52/65 (80%), Gaps = 3/65 (4%)

Query: 17  NSTENSHATERDRVRIEFYATYDVMTGVRIAATLGGFFALMVFLIVYKSRSKS---VKAL 73
           N TE  +A ER R+R EF+ATYDVMTGVRIAATLGGFF LMVFLIV+KSRS S   +K L
Sbjct: 132 NLTEAENAAERARIREEFFATYDVMTGVRIAATLGGFFGLMVFLIVWKSRSSSNETMKVL 191

Query: 74  NDPKI 78
            DPK+
Sbjct: 192 KDPKM 196



 Score = 45.6 bits (103), Expect = 8e-05
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 211 ERLAPLASVGSVGPSYAVEC---EIASVGADSVFAEDEPDSTDGEVEQFSTDSGGGEAAA 267
           E+ APLAS+ S   S ++EC   E+ S+  DSVF  + P  TD +++Q S+DS   EAAA
Sbjct: 626 EKRAPLASLSSFKIS-SLECPDSELRSLDEDSVFGLESPADTDDDMQQLSSDSEEQEAAA 684

Query: 268 VGECTELAS 276
                + AS
Sbjct: 685 QAAQAQAAS 693


>BT023722-1|AAY85122.1|  424|Drosophila melanogaster AT10622p
           protein.
          Length = 424

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 236 GADSVFAEDEPDST--DGEVEQFSTDSGGGEAAAVG-ECTELASRPVHVPLRLDRASHSR 292
           G  S+   ++ DS     +VE+ S+D       ++G ECT L+   VH+P  LD  + + 
Sbjct: 361 GTPSISRSEQNDSARKKAKVEETSSDCMSNSGLSLGSECTSLSGVSVHLPTWLDDCTATS 420

Query: 293 ETLF 296
           +  F
Sbjct: 421 KNAF 424


>AE014297-332|AAF51969.1|  424|Drosophila melanogaster CG2104-PA
           protein.
          Length = 424

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 236 GADSVFAEDEPDST--DGEVEQFSTDSGGGEAAAVG-ECTELASRPVHVPLRLDRASHSR 292
           G  S+   ++ DS     +VE+ S+D       ++G ECT L+   VH+P  LD  + + 
Sbjct: 361 GTPSISRSEQNDSARKKAKVEETSSDCMSNSGLSLGSECTSLSGVSVHLPTWLDDCTATS 420

Query: 293 ETLF 296
           +  F
Sbjct: 421 KNAF 424


>M38643-1|AAA28939.1|  549|Drosophila melanogaster protein (
           D.melanogaster mobileelement jockey gag-specific protein
           gene, complete cds.).
          Length = 549

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 205 LSPCPSERLA-----PLASVGSVGPSYAVECE-IASVGADSVFAEDEPDSTDGEVEQFST 258
           L+P PS +       PL    S   + A+     A + A++   E +    D ++E  + 
Sbjct: 128 LTPSPSRKTKRQATMPLNEEASTSTAAALNNNRFALLSAEAENMEQDVSDADSDIEDSAA 187

Query: 259 DSGGGEAAAVGECTELASRPVHVPLRLDRA 288
             GGG++A   +   +    V  P+ L+RA
Sbjct: 188 RDGGGQSAKYSKPPAICVPSVSDPVTLERA 217


>M22874-1|AAA28674.1|  583|Drosophila melanogaster nucleic
           acid-binding protiein protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 205 LSPCPSERLA-----PLASVGSVGPSYAVECE-IASVGADSVFAEDEPDSTDGEVEQFST 258
           L+P PS +       PL    S   + A+     A + A++   E +    D ++E  + 
Sbjct: 162 LTPSPSRKTKRQATMPLNEEASTSTAAALNNNRFALLSAEAENMEQDVSDADSDIEDSAA 221

Query: 259 DSGGGEAAAVGECTELASRPVHVPLRLDRA 288
             GGG++A   +   +    V  P+ L+RA
Sbjct: 222 RDGGGQSAKYSKPPAICVPSVSDPVTLERA 251


>AE014296-669|AAF47779.2|  942|Drosophila melanogaster CG14973-PA
           protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 195 SVVCALQERRLSPCPSERLAPLASVGSVGPSYAVECEIASVGADSV 240
           SVV A  E    P PS+ +AP+A  GS  P+     ++ S  + SV
Sbjct: 457 SVVPAKLEDVCEPQPSKPVAPVAPPGSTAPAVPSGTQLKSTNSGSV 502


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,218
Number of Sequences: 52641
Number of extensions: 425943
Number of successful extensions: 1051
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 9
length of query: 296
length of database: 24,830,863
effective HSP length: 84
effective length of query: 212
effective length of database: 20,409,019
effective search space: 4326712028
effective search space used: 4326712028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)