GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001125-TA|BGIBMGA001125-PA|undefined
         (296 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya bi...    29   3.0  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   6.9  
AY661556-1|AAV70493.1|  714|Caenorhabditis elegans acetylcholine...    28   6.9  
AF078786-4|AAC26944.4|  714|Caenorhabditis elegans Sodium:neurot...    28   6.9  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   9.2  

>AF003145-3|AAB57717.1|  751|Caenorhabditis elegans Cpeb polya
           binding family protein 3 protein.
          Length = 751

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 195 SVVCALQERRLSPCPSERLAPLASVGSVGPSYAVECEIASV--GADSVFAEDEPDSTDGE 252
           S+V    ER+    PS +L+P+ SVG   P+ A   ++      +DSV   +E D+ +  
Sbjct: 15  SIVAKSTERKNKIPPSLKLSPVESVGEKSPTPATVYDLFKKYHKSDSVKPTEE-DNMNVG 73

Query: 253 VEQFSTDSGGG 263
            ++ STD   G
Sbjct: 74  FDKLSTDEKNG 84


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 193 GSSVVCALQERRLSPCPSERLAPLASVGSVGPSYAVECEIASVGADSVFAEDEPDSTDGE 252
           G  ++C  ++ R+ PCP        +     P   VE  +    A ++   + P    G+
Sbjct: 150 GKPIMCQFKQGRVMPCPENGFCETTTGFCCVPGVDVEPPVVVTRAPAIIENERP--WRGQ 207

Query: 253 VEQFSTDSGGGEAAAVG 269
           V    +   GG A   G
Sbjct: 208 VCSPQSGCSGGAACICG 224


>AY661556-1|AAV70493.1|  714|Caenorhabditis elegans
           acetylcholine/choline transporter protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 27  RDRVRIEFYATYDVMTGVRIAATLGGFFALMVFLIVYKSRSKSVKAL 73
           RD   + F    + + GV +A    G F +M+ L+V+ ++   V+ +
Sbjct: 407 RDGFHLVFVFLAEALAGVSVAPLYAGLFFIMILLVVHATQMFVVETI 453


>AF078786-4|AAC26944.4|  714|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 6
           protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 27  RDRVRIEFYATYDVMTGVRIAATLGGFFALMVFLIVYKSRSKSVKAL 73
           RD   + F    + + GV +A    G F +M+ L+V+ ++   V+ +
Sbjct: 407 RDGFHLVFVFLAEALAGVSVAPLYAGLFFIMILLVVHATQMFVVETI 453


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
            protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 5    DGWNGRDTNSAENS--TENSHATERDRVRIEFYATYDVMTGVRIAATLGG----FFALMV 58
            D +   ++NS +N+     SH +     ++ F    DV+T  RIA T GG    FF++ +
Sbjct: 1201 DIFGKEESNSKKNAICALISHESRTLSRKMRFEKLLDVITASRIARTFGGSMQSFFSIFL 1260

Query: 59   FLIV 62
             +IV
Sbjct: 1261 SIIV 1264


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,718,589
Number of Sequences: 27539
Number of extensions: 199110
Number of successful extensions: 450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 5
length of query: 296
length of database: 12,573,161
effective HSP length: 81
effective length of query: 215
effective length of database: 10,342,502
effective search space: 2223637930
effective search space used: 2223637930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)