GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001125-TA|BGIBMGA001125-PA|undefined
         (296 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 5   DGWNGRDTNSAENSTENSHATERDRVRIEFYATYDVMTGVRIAATLG 51
           DGW G+    A  S   S  +  + + +EFY    +    RI    G
Sbjct: 612 DGWGGKAGPCAIKSVVPSDESHWNDLAMEFYYNRSIPDHKRIVKLRG 658


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 5   DGWNGRDTNSAENSTENSHATERDRVRIEFYATYDVMTGVRIAATLG 51
           DGW G+    A  S   S  +  + + +EFY    +    RI    G
Sbjct: 650 DGWGGKAGPCAIKSVVPSDESHWNDLAMEFYYNRSIPDHKRIVKLRG 696


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 215 PLASVGSVGPSYAVECEI 232
           PL  + ++  SY ++CEI
Sbjct: 47  PLIKLNNIPKSYGIKCEI 64


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,752
Number of Sequences: 429
Number of extensions: 2374
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 296
length of database: 140,377
effective HSP length: 57
effective length of query: 239
effective length of database: 115,924
effective search space: 27705836
effective search space used: 27705836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)