GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001125-TA|BGIBMGA001125-PA|undefined
         (296 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53440.1 68418.m06641 expressed protein                             29   4.9  
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    29   4.9  

>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 5   DGWNGRDTNSAENSTENSHATERDRVRIE 33
           D WNG+D +  E+S +   ++E+ R R E
Sbjct: 86  DRWNGKDDDKGESSKKTKVSSEKSRKRDE 114


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 44  VRIAATLGGFFALMVFL-IVYKSRSKSVKALNDP 76
           V IAA++ G FAL+V L I +  + K+VKA   P
Sbjct: 512 VAIAASVAGVFALLVILAIFFVIKRKNVKAHKSP 545


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,504,448
Number of Sequences: 28952
Number of extensions: 190524
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 2
length of query: 296
length of database: 12,070,560
effective HSP length: 81
effective length of query: 215
effective length of database: 9,725,448
effective search space: 2090971320
effective search space used: 2090971320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)