Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001124-TA|BGIBMGA001124-PA|IPR000097|AP endonuclease,
family 1, IPR004808|Exodeoxyribonuclease III xth,
IPR005135|Endonuclease/exonuclease/phosphatase
         (632 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    29   0.15 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   5.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   5.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 64  DTNGQDENGKIEETAPKKGRKKNVEEPPV-----ENKSTDEPSVEDEVAVSEEN 112
           + N +      +ET PKK RK      PV     E K ++E ++ D    +E++
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQS 829


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/72 (16%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 62  AGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPSVEDEVAVSEENNPSEDGSET 121
           A + N  ++N   +    + G ++N +    +NK       +++   + +N+  ++G+  
Sbjct: 437 ADNQNANNQNADNQNANKQNGNRQN-DNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQ 495

Query: 122 NGHIEEEQVPSG 133
           NG+ + +   +G
Sbjct: 496 NGNKQNDNKQNG 507


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 49  IVSEKKTKRGRKAAGDTNGQDENGKIEETAPKKGRKKNVEEPPVENKSTDEPS--VEDEV 106
           +V E   +    A     G+ +NG+ +           + EP VE  S+  P+  +    
Sbjct: 462 VVEEAACRFSAVAQAQLGGERQNGRKDSGYDGAASTAVIHEPVVETNSSPSPNPRIASAP 521

Query: 107 AVSEENNPSEDGSETNG 123
           + S  ++P   G+   G
Sbjct: 522 SSSTSSSPPAKGAAAAG 538


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 32  VEDPETESVEAEVDEKNIVSEKKTKRGRKAAGD 64
           + + ET S E E D + +  E  T+  ++ AG+
Sbjct: 314 LSESETSSDEEEADTRPLKKEPITQSNKRTAGN 346


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 495 WNEEFLKHVKELDKKKPVIIC---GDMNVSH 522
           W EEFL  +  LD K   + C   G  N  H
Sbjct: 29  WTEEFLSTILRLDPKFIALHCQEVGGKNYEH 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.129    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,217
Number of Sequences: 429
Number of extensions: 7812
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 632
length of database: 140,377
effective HSP length: 62
effective length of query: 570
effective length of database: 113,779
effective search space: 64854030
effective search space used: 64854030
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 47 (23.0 bits)