Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001123-TA|BGIBMGA001123-PA|IPR001494|Importin-beta,
N-terminal, IPR013598|Exportin 1-like
(1004 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 72 3e-12
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 33 1.5
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 32 2.0
06_01_0512 - 3695109-3695523,3696318-3696868 31 4.6
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 31 4.6
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666... 31 6.1
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715... 30 8.1
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 71.7 bits (168), Expect = 3e-12
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 4/222 (1%)
Query: 24 AVELTLNPTVSQDARNQAYNACESFKENSPWC-AQAGLLLASGNQYSPVVKHCGLQLMEH 82
A+ ++ S DAR+ A+ ES K A LL +Q S V H G ++++H
Sbjct: 13 AISAVMDWRSSPDARSAAFAYLESVKTGDVRALANTSFLLVRKDQSSEVRLH-GFKMLQH 71
Query: 83 TVKYRWTRITQAEKLFIKENAMKLL--YMGGWEMGHLNDALARVIVEMIKREWPQQWPTL 140
V+ RW ++ AE+ + L+ +G E L A ++ E+++RE W TL
Sbjct: 72 LVRLRWEELSVAERNEFANLTVNLIPEVVGPHEEWALKSQTAALVAEVVRREGVALWNTL 131
Query: 141 LGELSDACTRGHQHTQIVLHVFLRLVEDVATLQTLEQNQRRKDIYQALTSNMAEIFSFFM 200
L + G ++V + L ED+ + RR+ + + LT ++ +I
Sbjct: 132 LPSIVSLSNNGPIEAELVAMILRWLPEDITVHNEDLEGDRRRALLRGLTESLPQILPLLY 191
Query: 201 RLIELHVQEFREKTATGDYSGAASNGRVVQVVLLTLTGFVEW 242
L+E H A + + VL + EW
Sbjct: 192 SLLEKHFVAALSAHTNQQMELAKQHVGTITAVLNAANAYAEW 233
>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 32.7 bits (71), Expect = 1.5
Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 4/183 (2%)
Query: 48 FKENSPWCA-QAGLLLASGNQYSPVVKHCGLQLMEHTVKYRWTRITQAEKLFIKENAMKL 106
F++ +CA +A L SG S +V+ G++L+ V Y WT + + + F+ K
Sbjct: 1306 FQKYKIFCAIEAPSLSTSGTTLSTMVELLGVKLIAVMVGYCWTELQENDLHFVFHTVQKW 1365
Query: 107 LYMGGWEMGHLNDALARVIVEMIKREWPQQWPTLLGELSDACTRGHQHTQIVLHVFLRLV 166
+ + + DA+ ++ E + L+ D T +V L +
Sbjct: 1366 IESAVLLVEEMTDAINDAVINQKSNEDTLEKLKLVVSSIDELTLSFGEFALVTLCHLNHL 1425
Query: 167 EDVATLQTLEQNQRRKD-IYQALTSNMAEIFSFFMRLIELHVQEFREKTATGDYSGAASN 225
D+ + + Q K + +NM E S + V E K++ + S ++
Sbjct: 1426 VDIQETENFQSLQIIKSGDFADRNNNMME--SMLRLFLASGVSEAIAKSSCEEASSIIAS 1483
Query: 226 GRV 228
RV
Sbjct: 1484 SRV 1486
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 32.3 bits (70), Expect = 2.0
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 90 RITQAEKLFIKENAMKLLYMGGWEMGHLNDALARVIVEMIKREWPQQWPTLLGELSDACT 149
+I++++KL ++EN + + L L I +I ++P+QWP LL ++
Sbjct: 51 KISESDKLMVRENILGFIVQ---VPPLLRAQLGESIKTIIHSDYPEQWPVLLHWVTHNLE 107
Query: 150 RGHQ--HTQIVLHVFLRLVEDVATLQTLEQNQRRKDIYQALTSNMAEIFSFFMRLIEL 205
+Q VL V R E + + R +Y + + S F +L+++
Sbjct: 108 SENQIFGALYVLRVLSRKYE-------FKSEEERIPLYHIVEETFPRLLSIFSKLVQI 158
>06_01_0512 - 3695109-3695523,3696318-3696868
Length = 321
Score = 31.1 bits (67), Expect = 4.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 73 KHCGLQLMEHTVKYRWTRITQAEKLFIKENAMKLLYMGGWEMGHLNDALARV 124
KHCG +ME + W I Q L++K NA K + M N+++ V
Sbjct: 39 KHCGHIVMELHEWFPWKTIGQVIGLYMKLNAGKPMVMHSLNKSDANNSIGEV 90
>02_05_1142 -
34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 31.1 bits (67), Expect = 4.6
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 571 PVFGRLHELSRAALARPDLSVVESVTLQEALLLVSNHFCCYERQSALVAQVVGECGPRWA 630
PV R + +RP +SV+ + T ++++S HF S++ + + +C +W
Sbjct: 280 PVITRTGSDPQTLDSRPVVSVILNATDASTIVIISLHFVHMNVFSSVHSDLCLKCCSKWK 339
Query: 631 A--LSSQAGSATALVR 644
A + S+A + ALVR
Sbjct: 340 ASGIWSRADAMAALVR 355
>10_08_0371 +
17265691-17265788,17265873-17265971,17266586-17266628,
17267250-17267321,17267400-17267495,17267609-17267842,
17267914-17268097,17268247-17268358,17268447-17268533,
17268703-17268841,17269628-17269718,17270045-17270154,
17270309-17270413,17270982-17271055,17271379-17271454,
17271786-17272022,17272419-17272490,17273082-17273153,
17273240-17273304,17273306-17273383,17273384-17273486,
17273769-17273858,17274873-17274980,17275063-17275113,
17276126-17276203,17276284-17276346,17276944-17277140,
17277243-17277312,17277640-17277828
Length = 1030
Score = 30.7 bits (66), Expect = 6.1
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 140 LLGELSDACTRGHQHTQIVLHVFLRLVEDVATLQTLEQNQRRKDIYQALTSNMAEIF 196
L+G LSD+ G Q V++V + +V + +L L+ + +D Y AL S++ E++
Sbjct: 815 LVGFLSDSSIEGSQDIAEVIYVGVDIVTPLISLDLLKYPKLSRD-YFALISHLLEVY 870
>06_02_0322 +
14369221-14369540,14370240-14370918,14371347-14371573,
14372121-14372312,14372394-14372550,14373860-14374093
Length = 602
Score = 30.3 bits (65), Expect = 8.1
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 413 SYVEQWTQSALDKLESCPRALHTQHPLYVEWEALTQALDVVLSRLVETEPRPSAAAGLA 471
S+V + T++ K+ S PR++ Q L + + +D+V SR++ET P+AAA A
Sbjct: 400 SFVRKLTETVWQKI-SDPRSI--QGILKQVYADHSTNVDMVFSRIIETTQHPAAAASFA 455
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,919,999
Number of Sequences: 37544
Number of extensions: 859020
Number of successful extensions: 2057
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2051
Number of HSP's gapped (non-prelim): 10
length of query: 1004
length of database: 14,793,348
effective HSP length: 89
effective length of query: 915
effective length of database: 11,451,932
effective search space: 10478517780
effective search space used: 10478517780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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