Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001123-TA|BGIBMGA001123-PA|IPR001494|Importin-beta,
N-terminal, IPR013598|Exportin 1-like
(1004 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 51 5e-06
Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical pr... 31 4.1
Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical pr... 31 4.1
DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping... 31 4.1
AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical ... 31 4.1
AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical ... 31 4.1
Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical pr... 31 5.4
AY305840-1|AAR11985.1| 238|Caenorhabditis elegans nuclear recep... 31 5.4
AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormo... 31 5.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 30 7.1
AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical ... 30 9.4
AF016672-4|AAD47126.1| 968|Caenorhabditis elegans Hypothetical ... 30 9.4
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 50.8 bits (116), Expect = 5e-06
Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 27/222 (12%)
Query: 67 QYSPV--VKHCGLQLMEHTVKYRWTRITQAEKLFIKENAMKLLYMGGWEMGHLNDA---- 120
QYS + K+ LQ++E ++++W + Q ++ IK + ++ + + +
Sbjct: 67 QYSQLNESKYFALQILETVIQHKWKSLPQVQREGIKSYIITKMFELSSDQSVMEQSQLLL 126
Query: 121 --LARVIVEMIKREWPQQWPTLLGELSDACTRGHQHTQIVLHVFLRLVEDVATLQTLEQN 178
L V+V+++K++WP+ WPT + ++ D+ +++ L E+V +
Sbjct: 127 HKLNLVLVQIVKQDWPKAWPTFITDIVDSSKNNETVCINNMNILSLLSEEVFDFGSQNLT 186
Query: 179 Q-RRKDIYQALTSNMAEIFSFFMRLIELHVQEFREKTATGDYSGAASNGRVVQVVLLTLT 237
Q + + + Q E+F+ + ++E + +VQ L TL
Sbjct: 187 QAKEQHLKQQFCGQFQEVFTLCVSILE-----------------KCPSNSMVQATLKTLQ 229
Query: 238 GFVEWVSTNHVVMNNGRXXXXXXXXXXXXVFQLPAAECLLQI 279
F+ W+ +V N V+++ A +CL +I
Sbjct: 230 RFLTWIPVGYVFETN-ITELLSENFLSLEVYRVIALQCLTEI 270
>Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 31.1 bits (67), Expect = 4.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 378 DYDSEQEFNTFFNKLRTEILDSFRFCMMAAPLVTWSYVEQWTQSALDKLESCP 430
D E EF N + EI D+ R C L W Y++ + DK+ CP
Sbjct: 152 DILDELEFRFISNMVECEINDNIRVC-FHLELAHWYYIDHMVED--DKISGCP 201
>Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 31.1 bits (67), Expect = 4.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 378 DYDSEQEFNTFFNKLRTEILDSFRFCMMAAPLVTWSYVEQWTQSALDKLESCP 430
D E EF N + EI D+ R C L W Y++ + DK+ CP
Sbjct: 175 DILDELEFRFISNMVECEINDNIRVC-FHLELAHWYYIDHMVED--DKISGCP 224
>DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping
protein protein.
Length = 770
Score = 31.1 bits (67), Expect = 4.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 378 DYDSEQEFNTFFNKLRTEILDSFRFCMMAAPLVTWSYVEQWTQSALDKLESCP 430
D E EF N + EI D+ R C L W Y++ + DK+ CP
Sbjct: 136 DILDELEFRFISNMVECEINDNIRVC-FHLELAHWYYIDHMVED--DKISGCP 185
>AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 31.1 bits (67), Expect = 4.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 378 DYDSEQEFNTFFNKLRTEILDSFRFCMMAAPLVTWSYVEQWTQSALDKLESCP 430
D E EF N + EI D+ R C L W Y++ + DK+ CP
Sbjct: 152 DILDELEFRFISNMVECEINDNIRVC-FHLELAHWYYIDHMVED--DKISGCP 201
>AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 31.1 bits (67), Expect = 4.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 378 DYDSEQEFNTFFNKLRTEILDSFRFCMMAAPLVTWSYVEQWTQSALDKLESCP 430
D E EF N + EI D+ R C L W Y++ + DK+ CP
Sbjct: 175 DILDELEFRFISNMVECEINDNIRVC-FHLELAHWYYIDHMVED--DKISGCP 224
>Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical
protein F23B2.10 protein.
Length = 393
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 165 LVEDVATLQTLEQNQRRKDIYQALTSNMAEIFSFFMRLIELHVQEFREK 213
L EDV ++ ++ R DI +AL N +FSF M+ IE ++EF+ K
Sbjct: 158 LKEDVVMMKNIK---RLYDIAKAL--NYLSMFSFSMKQIEREIEEFKNK 201
>AY305840-1|AAR11985.1| 238|Caenorhabditis elegans nuclear receptor
NHR-128 protein.
Length = 238
Score = 30.7 bits (66), Expect = 5.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 711 KTYLYEINFFIVLMHLSQRWDYIM---SLYESGKLEEETGSESQEVLEDILVRNLTKEYL 767
K YL + I L S +Y++ SL +GK+ + E+ + L+ +L NL K Y+
Sbjct: 124 KNYLKGLEALIELNPSSIEVNYMLLQLSLQHAGKILLGSAQEATDKLQHVLADNLHKYYV 183
Query: 768 EVIKV 772
E K+
Sbjct: 184 ETAKI 188
>AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 128, isoform b protein.
Length = 451
Score = 30.7 bits (66), Expect = 5.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 711 KTYLYEINFFIVLMHLSQRWDYIM---SLYESGKLEEETGSESQEVLEDILVRNLTKEYL 767
K YL + I L S +Y++ SL +GK+ + E+ + L+ +L NL K Y+
Sbjct: 337 KNYLKGLEALIELNPSSIEVNYMLLQLSLQHAGKILLGSAQEATDKLQHVLADNLHKYYV 396
Query: 768 EVIKV 772
E K+
Sbjct: 397 ETAKI 401
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
protein C41A3.1 protein.
Length = 7829
Score = 30.3 bits (65), Expect = 7.1
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 728 QRWDYIMSLYESGKLEEETGSESQEVLEDILVRNLTKEYLEVIK--VSLVEGGVVSSADT 785
Q W + + + ++E+T S + + VR + K++L++ + ++L+E G V S +
Sbjct: 707 QFWPEVQTAMTTNIVDEQTNSSLSDAEIESTVRTIVKQFLDIEEDDINLLETGAVDSLTS 766
Query: 786 CDDME 790
+ +E
Sbjct: 767 IEMVE 771
>AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical
protein F56D12.6b protein.
Length = 951
Score = 29.9 bits (64), Expect = 9.4
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 132 EWPQQWPTLLGELSDACTRGHQHTQIVLHVFLRLVEDVATLQTLEQNQRRKDI-YQALTS 190
+W P+L L + G H + +F++ D +L+ L++ + + +Q L +
Sbjct: 855 KWVAGNPSLGWNLLEISRNGDVHGSLKARIFMKNSGDEVSLEMLDRKPAQVFVQFQCLEA 914
Query: 191 NMAEIFSFFMRLIELHVQEFREKTATGDY 219
N++ + ++ H+ R+K G Y
Sbjct: 915 NLSGVDISLVQSDIYHLSMIRKKVLAGKY 943
>AF016672-4|AAD47126.1| 968|Caenorhabditis elegans Hypothetical
protein F56D12.6a protein.
Length = 968
Score = 29.9 bits (64), Expect = 9.4
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 132 EWPQQWPTLLGELSDACTRGHQHTQIVLHVFLRLVEDVATLQTLEQNQRRKDI-YQALTS 190
+W P+L L + G H + +F++ D +L+ L++ + + +Q L +
Sbjct: 872 KWVAGNPSLGWNLLEISRNGDVHGSLKARIFMKNSGDEVSLEMLDRKPAQVFVQFQCLEA 931
Query: 191 NMAEIFSFFMRLIELHVQEFREKTATGDY 219
N++ + ++ H+ R+K G Y
Sbjct: 932 NLSGVDISLVQSDIYHLSMIRKKVLAGKY 960
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,632,182
Number of Sequences: 27539
Number of extensions: 706766
Number of successful extensions: 1650
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1647
Number of HSP's gapped (non-prelim): 13
length of query: 1004
length of database: 12,573,161
effective HSP length: 89
effective length of query: 915
effective length of database: 10,122,190
effective search space: 9261803850
effective search space used: 9261803850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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