Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001123-TA|BGIBMGA001123-PA|IPR001494|Importin-beta,
N-terminal, IPR013598|Exportin 1-like
         (1004 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   4.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   7.1  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 31  PTVSQDARNQAYNACESFKENSPWCAQAGLLLASGNQYSPVV 72
           P   QD+  + +N C+S +   P C +A  L+    ++ P V
Sbjct: 85  PRSMQDSTKKLFNKCKSIQNEDP-CEKAYQLVKCYVEFHPEV 125


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 374 YACIDYDSEQEFNTFFNKLRTEIL 397
           Y  + YD + + +TFF++L  E++
Sbjct: 125 YETLSYDCDVDVSTFFDQLGQEVI 148


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 715 YEINFFIVLMHLSQRWDYIMSLYESGKLEEETGSESQEVLEDILVRNLTKEYLEVIKVSL 774
           Y++   + ++ +  +W Y+  +YE    E   G ++ E LE++L +   +     IK  L
Sbjct: 266 YQVKAMVEIV-MKMKWSYVSIIYE----ESNYGIKAFEELEELLGK---RNICIAIKEKL 317

Query: 775 V-EGGVVSSA 783
           V + GV   A
Sbjct: 318 VKDSGVAKDA 327


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,326
Number of Sequences: 429
Number of extensions: 7606
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 1004
length of database: 140,377
effective HSP length: 65
effective length of query: 939
effective length of database: 112,492
effective search space: 105629988
effective search space used: 105629988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)