GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001123-TA|BGIBMGA001123-PA|IPR001494|Importin-beta,
N-terminal, IPR013598|Exportin 1-like
         (1004 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    27   0.64 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   4.5  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    24   5.9  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 899 QTYETLRPQFPNIVNVLRAIPDVDAHDLQRLEDKLANNTGKPSKIDKSKRDLFKKITSKL 958
           ++ + L+ ++P I   LRA+ D D   +++ E      +GKPS +  +       I S  
Sbjct: 85  RSIKRLKKEYPKIWEQLRAVWDPDDVFIRKFETSF--ESGKPSGVISTNTSPPSPILSNR 142

Query: 959 IGRN 962
            G N
Sbjct: 143 FGEN 146


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 54  WCAQAGLLLASGNQYSPVVKHCGLQL 79
           WC Q+   LA+   +    KHCG+ +
Sbjct: 382 WCKQSFPSLAAMTTHMKEAKHCGVNV 407


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 228 VVQVVLLTLTGFVEWVSTNHVVMNNGRXXXXXXXXXXXXVFQLP-AAECLLQIVNRKGSQ 286
           VV VV++   GF+EW     V    GR            V+ LP     L+    RK + 
Sbjct: 99  VVFVVVMGYIGFIEWDKVEIVRSQEGR-FEEAVIDYLFTVYLLPIIINPLVLYEARKLAN 157

Query: 287 LTSLWSNAQNV 297
           + + W N + +
Sbjct: 158 VVTDWVNFERI 168


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,957
Number of Sequences: 317
Number of extensions: 6440
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 1004
length of database: 114,650
effective HSP length: 64
effective length of query: 940
effective length of database: 94,362
effective search space: 88700280
effective search space used: 88700280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)