GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001123-TA|BGIBMGA001123-PA|IPR001494|Importin-beta,
N-terminal, IPR013598|Exportin 1-like
         (1004 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    48   9e-06
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    44   1e-04

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 38  RNQAYNACESFKENSPWCAQAGLLLASGNQYSPVVKHCGLQLMEHTVKYRWTRITQAEKL 97
           + QA      F+ +    +QA  +L   ++Y P  K+  L +++  +  RW  + + ++L
Sbjct: 31  QQQAQQVLTQFQAHPDAWSQAYSILEK-SEY-PQTKYIALSVLDKLITTRWKMLPKEQRL 88

Query: 98  FIKENAMKLLYMGGWEMGHLN------DALARVIVEMIKREWPQQWPTLLGELSDACTRG 151
            I+   + ++     +   L       + L   +V+++K+EWP  WP  + E+  A    
Sbjct: 89  GIRNYIVAVMIKNSSDETVLQQQKTFLNKLDLTLVQILKQEWPHNWPNFIPEIVQASKTN 148

Query: 152 HQHTQIVLHVFLRLVEDVATLQTLEQNQ-RRKDIYQALTSNMAEIFSFFMRLIE 204
               +  + V   L E++      +  Q + K++   +    AEIF    +++E
Sbjct: 149 LSLCENNMIVLRLLSEEIFDYSAEQMTQLKTKNLKNQMCGEFAEIFQLCSQILE 202


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 58/282 (20%), Positives = 115/282 (40%), Gaps = 26/282 (9%)

Query: 18  ADELSRAVELTLNPTVSQDARNQAYNACESFKENSPWCAQAGLLLASGNQYSPVVKHCGL 77
           A ++  AVE  L+P+V    + QA +   S + +S        + +   +Y P  +   L
Sbjct: 3   AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICL 62

Query: 78  QLMEHTVKYRWTRITQAEKL-FIKENAMKLLYMGGW--EMGHLNDALARVIVEMIKREWP 134
           Q +   V+  W   +   +L  I+++    +    +  E  ++++A+  ++  +  + +P
Sbjct: 63  QTLSEKVR-EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP 121

Query: 135 QQWPTLLGELSD--ACTRGHQHTQIVLHVFLRLVEDVA---TLQTLEQNQRRKDIYQALT 189
             W      L    A +   + +   L V L + +++A    L+T  Q Q+   +  A+ 
Sbjct: 122 SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIR 181

Query: 190 SN-MAEIFSFFMRLIELHVQEFREKTATGDYSGAASNGRVVQVVLLTLTGFVEWVSTNHV 248
           +N M++I SF   ++               YS A + G  V + L     +V W++ N +
Sbjct: 182 ANDMSDIVSFVYEMMLA-------------YSNAKNYG-TVGLCLQVYAQWVSWININLI 227

Query: 249 VMNNGRXXXXXXXXXXXXVFQLPAAECLLQIVNRKGSQLTSL 290
           V  N                +  A E + +IVN+K   L  L
Sbjct: 228 V--NEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKL 267


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,649,460
Number of Sequences: 5004
Number of extensions: 131773
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 2
length of query: 1004
length of database: 2,362,478
effective HSP length: 80
effective length of query: 924
effective length of database: 1,962,158
effective search space: 1813033992
effective search space used: 1813033992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)