GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001123-TA|BGIBMGA001123-PA|IPR001494|Importin-beta,
N-terminal, IPR013598|Exportin 1-like
         (1004 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)                    146   1e-34
SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   4e-05
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.010
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.66 
SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)                   32   2.0  

>SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)
          Length = 746

 Score =  146 bits (353), Expect = 1e-34
 Identities = 95/294 (32%), Positives = 139/294 (47%), Gaps = 36/294 (12%)

Query: 20  ELSRAVELTLNPTVSQDARNQAYNACESFKENSPWCAQAGLLLASGNQYSPVVKHCGLQL 79
           +L +A+E+TL P V    R +AY   E+FK N   C   G  L S  + S +V+H GLQL
Sbjct: 10  KLIKAIEVTLEPAVPAQLRTEAYEFIENFKNNLERCLTTGFRLFS-KENSAMVRHIGLQL 68

Query: 80  MEHTVKY-----------------------RWTRITQAEKLFIKENAMKLLYMGGWEMG- 115
           MEH+VKY                        W  + Q +    K+  M LL  G   M  
Sbjct: 69  MEHSVKYASCVPFCTWMAELESDLMNVFRFNWGSMQQNDCAVFKQRVMSLLVNGTKPMSE 128

Query: 116 ---HLNDALARVIVEMIKREWPQQWPTLLGELSDACTRGHQHTQIVLHVFLRLVEDVATL 172
              HL ++LAR++ E+ KREWPQ W   L +L+  C  G    ++VL V LRL EDV  +
Sbjct: 129 EPYHLKESLARLVAEVAKREWPQSWENFLSDLNGMCPLGKTQQELVLMVLLRLAEDVIGM 188

Query: 173 QTLEQNQRRKDIYQALTSNMAEIFSFFMRLIELHVQEFREKTATGDYSGAASNGRVVQVV 232
               QNQR++++  AL ++   IF FF+ ++  + +   +          A   R+ +  
Sbjct: 189 DVNLQNQRKREMMLALNTHSEGIFKFFLNMLTYNSKMLNQM--------MAECKRIAEQT 240

Query: 233 LLTLTGFVEWVSTNHVVMNNGRXXXXXXXXXXXXVFQLPAAECLLQIVNRKGSQ 286
           L T+ G++EWV    +   +                +LPA ECLL IVNRK  +
Sbjct: 241 LATMHGYLEWVKPQVLFQGDCVLFHTLYNLLADEDLKLPACECLLIIVNRKAGK 294



 Score = 40.7 bits (91), Expect = 0.006
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 378 DYDSEQEFNTFFNKLRTEILDSFRFCMMAAPLVTWSYVEQWTQSALD--KLESCPRALHT 435
           D++SE+EFN+ F+ +R++I+D  R   +  P+  +    +W    ++  KL         
Sbjct: 432 DFNSEKEFNSIFSGVRSQIMDILRQITLHFPVEAFMRPAEWLLQNIEKTKLHGLTGQSKL 491

Query: 436 QHPLYVEWEALTQALDVVLSRLVETE 461
              L V+W+ +   +D V++ L + +
Sbjct: 492 IDQLIVQWDGVWCYMDAVMTTLFKVD 517


>SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 18/35 (51%), Positives = 28/35 (80%)

Query: 945 KSKRDLFKKITSKLIGRNVGQLFKKEVFIVDLPTV 979
           K +RDLFKK+   +IG+++GQ+FK E+ I DLP++
Sbjct: 207 KKQRDLFKKVVEPIIGKHIGQMFKNEIKIKDLPSI 241


>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 39.9 bits (89), Expect = 0.010
 Identities = 29/152 (19%), Positives = 69/152 (45%), Gaps = 2/152 (1%)

Query: 66  NQYSPVVKHCGLQLMEHTVKYRWTRITQAEKLFIKENAMKLLYMGGWEM-GHLNDALARV 124
           N  +  V    + + E+ +  +W     ++K  I+    + L      +   + + LA+V
Sbjct: 43  NSQNHYVLMYAISIFENLINKQWIGTQPSDKTEIRSFLKQYLLSQHKALPAFVRNKLAKV 102

Query: 125 IVEMIKREWPQQWPTLLGELSDACTRGHQHTQIVLHVFLRLVEDVATLQTLEQNQRRKDI 184
           IV+M + +WP  +P  L ++ +   +   +T + L +     E++A+ +      RR ++
Sbjct: 103 IVDMGRLDWPHFYPNFLSDIMELIQQ-PSNTSLGLIMLQTTSEELASPREDLSIARRTEL 161

Query: 185 YQALTSNMAEIFSFFMRLIELHVQEFREKTAT 216
           ++ L   +  I S   +L++  + + R   +T
Sbjct: 162 HRLLLHEVPAILSLLTQLLDRILDKHRRLAST 193


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 33.9 bits (74), Expect = 0.66
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 552  RHAAGLLVKLGSKYPLLLL--PVFGRLHELSRAALARPDLSVV----ESVTLQEALLLVS 605
            RH   L   L    PL+L   P  G+   L  A  A PD+ VV     S T  E LL   
Sbjct: 2519 RHETLLYTWLAEHKPLVLCGPPGSGKTMTLFSALRALPDMEVVGLNFSSATTPELLLKTF 2578

Query: 606  NHFCCYERQSALVAQVVGECGPRWAAL 632
            +H+C Y R    +     + G +W  L
Sbjct: 2579 DHYCEYRRTPNGIVLAPAQLG-KWMVL 2604


>SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)
          Length = 1217

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 126 VEMIKREWPQQWPTLLGELSDACTRGHQHTQIVLHVFLRLVEDV-ATLQTLEQNQRRKD 183
           VE  +++    W T L E+   C RG Q   IVL   +  ++DV   L   +Q Q+ +D
Sbjct: 145 VERRRKDKINNWITKLAEVVPDCARGKQSKNIVLEKSVEYLKDVNKKLAQFDQIQQNRD 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,550,495
Number of Sequences: 59808
Number of extensions: 926324
Number of successful extensions: 2159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2152
Number of HSP's gapped (non-prelim): 8
length of query: 1004
length of database: 16,821,457
effective HSP length: 89
effective length of query: 915
effective length of database: 11,498,545
effective search space: 10521168675
effective search space used: 10521168675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)